Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00902 ATGATTGATGATCTTCAGAAGCTCAAGACACAGGTCGATGCTGAATTAAATGTTCTGATTAGCAGACTAGATTCAACTGAAAAAGAAAATTCTTTTGTAAAGTATGAGTTTCGGATGCTAGAGAAAGAGCTGGAAGTTCGGAACGAAGAACTGGAATATAATCGTTTGTTTGTTGATGAGTCATGCAAGCAACGCCTCGAGAATGAGAAGAAGATGACAGTTCTGGAAGCAGAATGTCAAAGACTCCGCCTTCTCATGCAAAAACGGCTGCCGAGTTCTGCTGCTTTGTCCAACATGAAGACTGAAGTTGATTTGCTTGGAAGGGGTCGGGCTGAAATGAAAAGAAATAAGAAAAAACTGAGCAGAGATCTGATTTCGAGAGATAACAATGCCGAAAATTTTGTTCAAATCCCTTCTAAACAGATTGATATAATCGTCGGGCAATTGCAAAGGATGGAAGAAGAAAACAAATCTCTTAAAGAAATAATCACAAATAAGACCTCTGAGCTCCATTCTTCGAGAATCATGCATTCTAGAACTGCTTCAAGATTATCTCAGATGGAAAAGAGGCTTGAAGAGCTTTCTAATGACCAAAAAGCAATTGACCTCGCAATATGTTCATCTACGAGCAAAGATGGATTGAGTTCTTCTCGGGATAATGCTATAGTATCAGTATTCAGAACTTCCGGAAGTGAGAAACTCAACAATTTTCCAGAAGCAAAAGCTTTAGACTTTTCAGACATGAGCTTGATGGATGATTTTGTTGAAATGGAGAAATTGGCATTAGTATCTGTGGGGACGCCTCATAGAAGCGGGCATGATCATGACGATAAAACAGGGAAAGAACTCGTTCTGGTTGAAAGTGTCGATTCCAGATCTTGTGACATAAAAAGGGAAATTCACTCAAAAGAGGTAGAAATTGGGAATCCATTTGACTGGCTTCAGGTGGTTTTGAATGCAATGTCGGAGCAAAAGCGTATTTCAAACCAAAGCATGGAAGATATTTTTCGGGACATTAAAATCGCCTTGGGTTATGTAAATCACTTGGATTTTGAGGATGTAGAAAAAACAGCAGTTTCATTGACGGCAGCTTCCGATTTTGAAACCAAAGTCAGCCAAAATGTTCAATCCAAATCCAATACATACAAGTCAGTCTCGAAAATCATTGAACTGGTAGAAAGGATCTGTTCATCGAGCCATAACTATCAAGACAACTTGGCTGAAAGAAACCAAACATCATTAGGAGACAATTTTATCCTGGTTTTCCGGTGGAACAAATCAGAACTGAATGCTATTTTAAGGGGTTTCATTCGCGTTTGTGATGATCTGTTGAATGGAAAAACTGATTTTGAAAAATTTGCTGAGGAACTAAGATTTACTTTAGATTGGATTTTAGAAAACTACAAAAGGGGTGGAGATACTTCGAGTCCGAGAGGTAAGATTAATGAGCATCTTGGCTTGAAAAAAACCTCCATTTCTGATGGCTTGAATGCTGAAGCTAGATTTGAATCGGCGACGGATAAGGTCAAGTTACTAACTATGCAGCTCCAGGAGTCGAAAAAGTACATTGGAAATTTGCAAGCAGAAGTGGAGGGTTTGAAGAAATCAAAGGGAAAAACTGAAGAACAGATTCAAAATCAAAAGTTGATCAATGAAGATCTTGATACACAGCTTTCAGTAGCCAGAGCTAAACTGAACGAAGCTTTCCATAAGTTTTCATCTTTAGAAGTTGAATTGGAAGATAAGAGTAACTGCTGTGAAGAGTTGGAAGCTGCATGCCTTGAACTTCAGCTCCAGCTTGAAAGCATTGTGAAGAAGGAAACTCCAAGAAACAGTATAAATGAAGAGGGAGAGCACAGCCCAAATGGTTGTGAGATCACAGCAGCTTCATCAAAGTTGGCCGAGTGCCAAGAAACCATCCTAAATCTTGGAAAAGAGCTGAAAGCACTGTCTTTGCCGAAGGAAGCAGCATCGTCGGAGAAGGCGTTTTCTACCACAAACCCTTCTACTGCCATTAATAGGAAGAACCTGATCAAACGCTCTTCGCTCCGAGATCAGATGCTGGCTGAGGATGATGCTAAAATGGTGATTCTAAAGGCTAAAGAAGCTAATACCTCGGCTGGAACAAAAATCCCTTCTGTTCTAGCTAATAATTCAAATGCTTTGTCTCTTATAACTGACATAAAATATCATGAAGCTGATCTTGGTTCAAGGAAGAAAGGCAAGGCAGCTGGGACAGTAGCTGTGGTATCAAGTAGAAGACCGGGAGGGTTTAGTTTGCTGCAGAAATTACTCAGAAGAAAGAAATCGGGAGGCAAGAGAAGTTGGTCGGTGGCCAAGGCGTGA 2346 40.07 MIDDLQKLKTQVDAELNVLISRLDSTEKENSFVKYEFRMLEKELEVRNEELEYNRLFVDESCKQRLENEKKMTVLEAECQRLRLLMQKRLPSSAALSNMKTEVDLLGRGRAEMKRNKKKLSRDLISRDNNAENFVQIPSKQIDIIVGQLQRMEEENKSLKEIITNKTSELHSSRIMHSRTASRLSQMEKRLEELSNDQKAIDLAICSSTSKDGLSSSRDNAIVSVFRTSGSEKLNNFPEAKALDFSDMSLMDDFVEMEKLALVSVGTPHRSGHDHDDKTGKELVLVESVDSRSCDIKREIHSKEVEIGNPFDWLQVVLNAMSEQKRISNQSMEDIFRDIKIALGYVNHLDFEDVEKTAVSLTAASDFETKVSQNVQSKSNTYKSVSKIIELVERICSSSHNYQDNLAERNQTSLGDNFILVFRWNKSELNAILRGFIRVCDDLLNGKTDFEKFAEELRFTLDWILENYKRGGDTSSPRGKINEHLGLKKTSISDGLNAEARFESATDKVKLLTMQLQESKKYIGNLQAEVEGLKKSKGKTEEQIQNQKLINEDLDTQLSVARAKLNEAFHKFSSLEVELEDKSNCCEELEAACLELQLQLESIVKKETPRNSINEEGEHSPNGCEITAASSKLAECQETILNLGKELKALSLPKEAASSEKAFSTTNPSTAINRKNLIKRSSLRDQMLAEDDAKMVILKAKEANTSAGTKIPSVLANNSNALSLITDIKYHEADLGSRKKGKAAGTVAVVSSRRPGGFSLLQKLLRRKKSGGKRSWSVAKA 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18891190 18893762 - Bpe001824.1 Bpe15g00902 116581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00902 781 Coils Coil 177 204 - -
Bpe15g00902 781 Pfam Filament-like plant protein, long coiled-coil 497 657 IPR008587 -
Bpe15g00902 781 Pfam Filament-like plant protein, long coiled-coil 1 493 IPR008587 -
Bpe15g00902 781 PANTHER FILAMENT-LIKE PROTEIN (DUF869) 1 774 - -
Bpe15g00902 781 Coils Coil 579 606 - -
Bpe15g00902 781 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 774 - -
Bpe15g00902 781 Coils Coil 142 169 - -
Bpe15g00902 781 Coils Coil 523 543 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00902 - - - pmum:103335249 625.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00101 Bpe-Chr13:6446274 Bpe15g00902 Bpe-Chr15:18891190 7.40E-72 dispersed
Bpe15g00902 Bpe-Chr15:18891190 Bpe15g00330 Bpe-Chr15:14826830 2.99E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1122 . . Lsi10g00525 . . . Blo04g00480 . . Bda14g00510 Bpe15g00902 . Bma03g00512 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003264 2 4 2 1 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 3 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00902 Bpe_Chr15 FPKM 19.160919 21.600298 15.976734 16.961081 34.517555 32.78125 35.785431 35.233849 31.4928 34.299625