Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00903 ATGGCTCAGATTCAACCTCCGCCTCAAAATGTGATGTCCGGTGTCAATCAAGGTGCGATCGGTGGTCAGAACCAGTTTGTGACGACCTCTATGTATGTTGGAGATCTTGACCCGAATGTAACAGATTCGCAGCTCTACGACCTATTTAATCAGGTCGGTCAGGTTGTTTCTGTTCGGGTCTGCAGGGATTTGTCTACTCGACATTCGCTTGGTTATGGTTACGTCAACTATGGCAATCCGCAAGATGGTGCTAGGGCATTGGACGTTTTGAATTTTACACCTATCAATGGAAAACCCATCCGAGTAATGTATTCTCATCGCGACCCAAGCATCCGAAAAAGTGGTGCTGGAAATATTTTTATTAAGAATTTAGACAAGGCGATCGACCACAAAGCATTACAGGAGACATTTTCTGCATTTGGAAATGTACTCTCCTGTAAGGTGGCCACAGACCAATCTGGCCAGTCAAAAGGTTATGGTTTTGTTCAATTTGATAGTCAGGAGTGTGCCCAAAAAGCTATTGAGAAGTTGAATGGAATGCTATTGAATGATAAGCAAGTCTTTGTCGGGCCTTTCCTTCGCAAACAGGAAAGAGACAGTTCTGTCAAAAAATCAAAATTTAACAATGTGTATTTAAAAAATCTCTCCGAAGAAACCACTGAAGAAGATCTGCAAAAGATTTTTGGTGAATTTGGTCCCATCACAAGTATAGCAGTGATGAGAGATGAGGATGGTAAATCAAAGTGCTTTGGGTTTGTGAATTTTGAGGATCCAGACGATGCGGCTAGGTCTGTTGAGGCACTTAATGGAAAGAAGTTTGATGGTAAGGAGTGGTATGTTGGGAAAGCCCAGAAGAAATCTGAGAGAGAAAATGAACTAAAAGCTCAATTTGAAAGTAGCTTGAAAGAAGCAGCTGACAAGTATCAGGGAGCAAACTTATATGTTAAAAATTTAGATGATAGTATCAACGATGATAAGCTTAAGGAGTTGTTCTCCCCATTTGGCACAATCACCTCTTGCAAGGTTATGCAAGACCCTAATGGAATAAGTAAGGGATCTGGGTTTGTGGCATTTTCCTCTTCTGAAGAGGCTTCTAGAGCGCTCTTGGAGATGAATGGAAAAATGGTCGCTAGCAAACCTCTGTATGTTGCACCTGCACAGAGGAAGGAAGAAAGAAAGCTCAAGCTACAAGCACAATTTTCTCAGATGCAGCCTGTAGCTATGCCACCTTCTGTCAACCCCCGGATGCCAATGTATCCAAACAATAGTCCTGGTCTTAGCCAACAAATATTCTATGGTCCGGCTCCACCAGCTATAATTCCTTCTCAGGCTGGCTTTGGTTATCAGCAACAAATTGTTCCAGGCATGAGGCCTGCTGGGGCTCCGATGGCAAACTTTTTTGTGCCAATGGTTCAACAGGGGCCACAAGGACGCCCTGGCGGCAGACGCTCTGGTGCTCTCCAGCAGACCCAGCAGCCTGTTCCACTAATGCAGCAGCAGATGGTACCAAGGGGGCGTGTGTACCGTTATCCTCCTGTCCGTGCCCTGCCTGATGTGCCTATGCCTGGCATTGCTGGTGGCATGTTTTCGTTTCCATATGACATGGGTGGCATGCCACTGCGTGATCCAGCTCTCTCTCAGCCAATTCCAATTGGTGCTTTGGCTTCAGCTCTAGCAAATGCTAGTCCAGATCAGCAGAGAACAATGCTGGGTGAGAGTCTTTATCCACTCGTGGAGCTGCTCGAGCCTGAAAATGCTGCTAAGGTGACTGGAATGCTTCTCGAAATGGATCAGACAGAAGTCTTACATTTGCTGGAGTCACCAGAAGCTCTGAAAGCCAAGGTGGCTGAGGCTATGGAGGTTCTGAGAAATGTTACTCAGCAGCAGATAGGAAACGCAGCTGATCAGTTACTCTCATTCTCTCTCAACGACAAGCTGGATTCCTGA 1947 45.51 MAQIQPPPQNVMSGVNQGAIGGQNQFVTTSMYVGDLDPNVTDSQLYDLFNQVGQVVSVRVCRDLSTRHSLGYGYVNYGNPQDGARALDVLNFTPINGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALQETFSAFGNVLSCKVATDQSGQSKGYGFVQFDSQECAQKAIEKLNGMLLNDKQVFVGPFLRKQERDSSVKKSKFNNVYLKNLSEETTEEDLQKIFGEFGPITSIAVMRDEDGKSKCFGFVNFEDPDDAARSVEALNGKKFDGKEWYVGKAQKKSERENELKAQFESSLKEAADKYQGANLYVKNLDDSINDDKLKELFSPFGTITSCKVMQDPNGISKGSGFVAFSSSEEASRALLEMNGKMVASKPLYVAPAQRKEERKLKLQAQFSQMQPVAMPPSVNPRMPMYPNNSPGLSQQIFYGPAPPAIIPSQAGFGYQQQIVPGMRPAGAPMANFFVPMVQQGPQGRPGGRRSGALQQTQQPVPLMQQQMVPRGRVYRYPPVRALPDVPMPGIAGGMFSFPYDMGGMPLRDPALSQPIPIGALASALANASPDQQRTMLGESLYPLVELLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVTQQQIGNAADQLLSFSLNDKLDS 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18896488 18900693 - Bpe001825.1 Bpe15g00903 116582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00903 648 SMART poly_2 562 625 IPR002004 GO:0003723
Bpe15g00903 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Bpe15g00903 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Bpe15g00903 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Bpe15g00903 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Bpe15g00903 648 SMART rrm1_1 118 190 IPR000504 GO:0003723
Bpe15g00903 648 SMART rrm1_1 209 281 IPR000504 GO:0003723
Bpe15g00903 648 SMART rrm1_1 30 103 IPR000504 GO:0003723
Bpe15g00903 648 SMART rrm1_1 312 384 IPR000504 GO:0003723
Bpe15g00903 648 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Bpe15g00903 648 Pfam Poly-adenylate binding protein, unique domain 558 622 IPR002004 GO:0003723
Bpe15g00903 648 PANTHER RNA BINDING PROTEIN 18 632 - -
Bpe15g00903 648 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 550 627 IPR002004 GO:0003723
Bpe15g00903 648 Gene3D - 193 293 IPR012677 -
Bpe15g00903 648 CDD RRM4_I_PABPs 310 388 - -
Bpe15g00903 648 CDD RRM2_I_PABPs 115 191 IPR045305 -
Bpe15g00903 648 SUPERFAMILY PABC (PABP) domain 491 630 IPR036053 GO:0003723
Bpe15g00903 648 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 623 IPR006515 GO:0003723
Bpe15g00903 648 SMART rrm2_1 209 281 IPR003954 GO:0003676
Bpe15g00903 648 SMART rrm2_1 312 384 IPR003954 GO:0003676
Bpe15g00903 648 SMART rrm2_1 30 103 IPR003954 GO:0003676
Bpe15g00903 648 SMART rrm2_1 118 190 IPR003954 GO:0003676
Bpe15g00903 648 CDD RRM1_I_PABPs 30 109 - -
Bpe15g00903 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Bpe15g00903 648 Gene3D - 546 629 - -
Bpe15g00903 648 Gene3D - 294 396 IPR012677 -
Bpe15g00903 648 CDD RRM3_I_PABPs 207 286 - -
Bpe15g00903 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Bpe15g00903 648 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Bpe15g00903 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Bpe15g00903 648 PANTHER POLYADENYLATE-BINDING PROTEIN 18 632 - -
Bpe15g00903 648 Gene3D - 22 118 IPR012677 -
Bpe15g00903 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Bpe15g00903 648 Gene3D - 119 190 IPR012677 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe12g00052 Bpe15g00903 CCT
Bpe12g00052 Bpe15g00903 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01797 Bpe-Chr2:20227109 Bpe15g00903 Bpe-Chr15:18896488 0 dispersed
Bpe04g01557 Bpe-Chr4:21907849 Bpe15g00903 Bpe-Chr15:18896488 4.06E-21 dispersed
Bpe05g01075 Bpe-Chr5:23258859 Bpe15g00903 Bpe-Chr15:18896488 1.07E-06 dispersed
Bpe11g01249 Bpe-Chr11:9297064 Bpe15g00903 Bpe-Chr15:18896488 3.51E-06 dispersed
Bpe15g00903 Bpe-Chr15:18896488 Bpe04g00192 Bpe-Chr4:1262758 3.79E-12 dispersed
Bpe11g01043 Bpe-Chr11:7780103 Bpe15g00903 Bpe-Chr15:18896488 2.17E-07 transposed
Bpe12g00052 Bpe-Chr12:406231 Bpe15g00903 Bpe-Chr15:18896488 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00903 K13126 - jre:108988866 1040.02