Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00916 ATGGCTACCAAGAGGAGCGTGGGCACTCTGACGGAGGCCGATTTGAACGGGAAGAGAGTGTTTATGAGAGTGGATCTGAATGTCCCGTTGGATGATAACTTCAATATCACTGACGACACCAGAGTCCGCGCTGCCGTGCCTACTATTAAGTACTTGTTAGGTCATGGAGCAAGGGTTATCCTTTCCAGCCACTTGGGACGCCCAAAAGGCGTGACACCCAAATATAGTTTGAAGCCTCTTGTGGCAAGACTGTCTGAACTCCTTGGCACTGAGGTTAAAATTGCTAACGATTGTATTGGCGAGGAAGTTGAGACATTGGTCGCTGAATTACCCAATGGAGGTGTATTGCTTCTTGAGAATGTGAGGTTCTACAAGGAGGAAGAGAAGAACGACCCTGAGTTTGCAAAGAAGCTAGCTTCTCTTGGAGATATCTATGTGAATGATGCATTTGGAACTGCTCATAGAGCTCATGCTTCAACAGAGGGAGTGGCTAAATACTTAAAACCTTCTGTTGCTGGATTTCTTATGCAGAAGGAACTCGACTATCTTGTTGGAGCTGTTGCAAATCCCAAGAGACCGTTTGCTGCCATTGTTGGTGGGTCAAAGGTATCTTCGAAGATTGGCGTGATTGAGTCATTATTGGAGAAGGTTGACGTTCTCTTGTTGGGAGGAGGAATGATCTTTACCTTCTACAAGGCGCAAGGGTATTCAGTTGGGTCATCCCTCGTTGAGGAAGACAAGCTTGATCTTGCTACCTCCCTTATGGAGAAGGCCAAAAATAAGGGGGTCTCTTTGCTACTTCCAACTGATGTGGTGATTGCTGAAAAATTTGCTCCTGATGCTAATAGCATGATTGTTCCGGCATCAGCTATCCCAGATGGTTGGATGGGATTGGATATTGGACCTGATTCGATCAAGACATTCAAGGAAGCTTTGGATTCAACAAAAACAATAATTTGGAATGGACCCATGGGCGTGTTTGAATTTGATAAGTTTGCTGCTGGAACAGAGGCAATTGCCAGGAAGCTTGCTGACCTCAGTGAAAAGAAGGTGACAACCATTATTGGAGGAGGAGACTCTGTGGCAGCAGTGGAAAAGGTTGGGCTTGCGGACAAGATGAGCCACATCTCCACCGGAGGTGGTGCCAGCTTAGAGCTTCTTGAAGGGAAGCCACTTCCGGGTGTCCTTGCTCTTGACGATGCT 1203 46.72 MATKRSVGTLTEADLNGKRVFMRVDLNVPLDDNFNITDDTRVRAAVPTIKYLLGHGARVILSSHLGRPKGVTPKYSLKPLVARLSELLGTEVKIANDCIGEEVETLVAELPNGGVLLLENVRFYKEEEKNDPEFAKKLASLGDIYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVANPKRPFAAIVGGSKVSSKIGVIESLLEKVDVLLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLMEKAKNKGVSLLLPTDVVIAEKFAPDANSMIVPASAIPDGWMGLDIGPDSIKTFKEALDSTKTIIWNGPMGVFEFDKFAAGTEAIARKLADLSEKKVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDDA 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18968521 18971041 + Bpe024591 Bpe15g00916 116595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00916 401 Pfam Phosphoglycerate kinase 11 390 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 Gene3D - 8 184 IPR015824 GO:0004618|GO:0006096
Bpe15g00916 401 SUPERFAMILY Phosphoglycerate kinase 8 400 IPR036043 GO:0004618|GO:0006096
Bpe15g00916 401 Gene3D - 187 400 IPR015824 GO:0004618|GO:0006096
Bpe15g00916 401 Hamap Phosphoglycerate kinase [pgk]. 9 400 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 CDD Phosphoglycerate_kinase 10 400 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 PIRSF Pgk 3 401 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 PRINTS Phosphoglycerate kinase family signature 113 128 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 PRINTS Phosphoglycerate kinase family signature 317 342 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 PRINTS Phosphoglycerate kinase family signature 14 30 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 PRINTS Phosphoglycerate kinase family signature 172 194 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 PRINTS Phosphoglycerate kinase family signature 195 214 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 PRINTS Phosphoglycerate kinase family signature 141 163 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 PRINTS Phosphoglycerate kinase family signature 376 393 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 PRINTS Phosphoglycerate kinase family signature 36 58 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 PRINTS Phosphoglycerate kinase family signature 353 364 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 PANTHER PHOSPHOGLYCERATE KINASE 3 401 - -
Bpe15g00916 401 PANTHER PHOSPHOGLYCERATE KINASE 3 401 IPR001576 GO:0004618|GO:0006096
Bpe15g00916 401 ProSitePatterns Phosphoglycerate kinase signature. 19 29 IPR015911 GO:0004618|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00916 K00927 PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3] - tcc:18594857 711.835
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01281 Bpe-Chr3:31338628 Bpe15g00916 Bpe-Chr15:18968521 5.30E-37 transposed
Bpe07g00471 Bpe-Chr7:7570316 Bpe15g00916 Bpe-Chr15:18968521 0 transposed
Bpe12g00036 Bpe-Chr12:303974 Bpe15g00916 Bpe-Chr15:18968521 4.73E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1133 . . . . . . Bma08g00819 . . . . . . . . . Cpe16g00710 Bhi05g01997 . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00916 . . Bma12g00579 . . . . . . . . Cpe05g01034 . . . . . . . . . . . . . . . Csa06g01152 . Cme01g01511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001509 2 3 3 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 1 2 2 2 2 2 1 2 3 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00916 Bpe_Chr15 FPKM 34.068268 37.04858 44.615791 45.860519 46.714226 43.220657 46.229977 51.399681 48.960789 52.854839