Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00918 AGAACAAGTAGGATCCGCAGTATTGAACCGATTAAAGCCACGGCTACCGAAGCACCTCGTGCAGTTCAAAGTTTTGGTCGTATAGGAAGGTTGGTGTTAAGAGTTGCCATTTCAAGAGATGATATTGATGTGGTGGCAGTTAATGATCCTTTCATCGATGCTAAATACATGGCGTACATGTTCAAATATGATTCTACACATGGAGGATTCAAAGGAACCATCAAGTTATTGGATGATTCCATTTTGGAAATTAATGGGAAGCAAATAAAAGTTATTAGCAAAAGGGACCCAGCTGAGGTTCCTTGGGATGGTTATGGGGCAGAGTTTGTTGTTGAATCATCCGGTGTTTTCACAACCATGGAGAAGGCTTCGGCACATTTGAAGGGTGGGGCCAGAAAAGTAGTCATATCAGCTCCATCTGCAGATGCTCCTATGTTTGTAGTTGGAGTTAATGAGAAGAGTTACATACCAAACATGGATATTGTCTCAAATGCAAGCTGTACAACAAATTGTCTTGCACCTATTGCCAAGGTGGTGCATGAGGAATTTGGTATTGTGGAAGGTCTTATGACAACTGTTCATGCAACTACAGCAACTCAGAAGACTGTTGATGGACCTTCCATGAAGGATTGGCGAGGAGGCCGTGGAGCAGGTCAAAATATAATTCCTAGTTCGACAGGTGCTGCAAAGGCTGTAGGAAAAGTTCTCCCTGAACTTAATGGAAAACTTACTGGAATGGCATTCCGCGTTCCTACACCGAATGTATCTGTTGTGGACTTAACTTGTAGACTTCAGAAGAAGGCATCTTATGATGATGTAAAAGCTGTAATCAAGTATGCAGCTGAAGGTCCACTTAGAGGCATTCTCGGATACACTGATGAAGATGTTGTTTCCAATGATTTTGTTGGTGATTCAAGGTCAAGTATATTTGATGCCAAGGCCGGAATAGGTCTCAGCACCTCCTTCATGAAGCTCGTCGCATGGTACGACAACGAATGGGGATACAGCAATCGAGTGCTGGACCTGATAGAGCACATGGCGATGGTGGCGGCTCACAACTAA 1062 43.5 RTSRIRSIEPIKATATEAPRAVQSFGRIGRLVLRVAISRDDIDVVAVNDPFIDAKYMAYMFKYDSTHGGFKGTIKLLDDSILEINGKQIKVISKRDPAEVPWDGYGAEFVVESSGVFTTMEKASAHLKGGARKVVISAPSADAPMFVVGVNEKSYIPNMDIVSNASCTTNCLAPIAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLQKKASYDDVKAVIKYAAEGPLRGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSTSFMKLVAWYDNEWGYSNRVLDLIEHMAMVAAHN 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18982348 18986214 + Bpe001840.1 Bpe15g00918 116597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00918 353 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 8 352 IPR020831 GO:0016620
Bpe15g00918 353 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 172 329 IPR020829 GO:0016620
Bpe15g00918 353 Gene3D Dihydrodipicolinate Reductase; domain 2 167 333 - -
Bpe15g00918 353 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 22 119 IPR020828 GO:0051287
Bpe15g00918 353 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 245 262 IPR020831 GO:0016620
Bpe15g00918 353 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 285 300 IPR020831 GO:0016620
Bpe15g00918 353 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 126 139 IPR020831 GO:0016620
Bpe15g00918 353 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 188 204 IPR020831 GO:0016620
Bpe15g00918 353 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 161 179 IPR020831 GO:0016620
Bpe15g00918 353 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 188 IPR036291 -
Bpe15g00918 353 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 8 352 - -
Bpe15g00918 353 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 22 341 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Bpe15g00918 353 Gene3D - 21 346 - -
Bpe15g00918 353 PIRSF GAPDH 21 351 IPR020831 GO:0016620
Bpe15g00918 353 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 165 172 IPR020830 GO:0016620
Bpe15g00918 353 SMART gp_dh_n_7 25 167 IPR020828 GO:0051287
Bpe15g00918 353 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 166 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00918 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - csv:101203472 620.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00301 Bpe-Chr2:1986586 Bpe15g00918 Bpe-Chr15:18982348 9.99E-105 transposed
Bpe14g01342 Bpe-Chr14:10707432 Bpe15g00918 Bpe-Chr15:18982348 1.39E-99 transposed
Bpe15g00204 Bpe-Chr15:13118083 Bpe15g00918 Bpe-Chr15:18982348 6.44E-165 transposed
Bpe12g00035 Bpe-Chr12:298495 Bpe15g00918 Bpe-Chr15:18982348 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1147 Blo04g00463 Blo13g00601 . . . . . . . . . . . . Sed05g1836 Cpe04g00865 Cpe16g00709 Bhi05g01995 Tan02g0029 . Lac12g0041 Hepe02g0014 . . . . . . . . . . . . . . Csa07g01207 . Cme11g01634 . . . . Bpe15g00918 . . . Sed05g3308 . . . . . . Cpe15g00903 Cpe05g01033 Bhi10g00938 Tan05g0584 Cmetu11g0258 . Hepe08g0647 . . . . . . . . . . Csa06g01151 Chy11g01041 Cme01g01504
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002415 1 2 2 0 2 2 3 1 2 2 1 1 3 2 2 3 2 1 4 1 2 1 2 2 2 1 2 4 7 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00918 Bpe_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0