Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00918 AGAACAAGTAGGATCCGCAGTATTGAACCGATTAAAGCCACGGCTACCGAAGCACCTCGTGCAGTTCAAAGTTTTGGTCGTATAGGAAGGTTGGTGTTAAGAGTTGCCATTTCAAGAGATGATATTGATGTGGTGGCAGTTAATGATCCTTTCATCGATGCTAAATACATGGCGTACATGTTCAAATATGATTCTACACATGGAGGATTCAAAGGAACCATCAAGTTATTGGATGATTCCATTTTGGAAATTAATGGGAAGCAAATAAAAGTTATTAGCAAAAGGGACCCAGCTGAGGTTCCTTGGGATGGTTATGGGGCAGAGTTTGTTGTTGAATCATCCGGTGTTTTCACAACCATGGAGAAGGCTTCGGCACATTTGAAGGGTGGGGCCAGAAAAGTAGTCATATCAGCTCCATCTGCAGATGCTCCTATGTTTGTAGTTGGAGTTAATGAGAAGAGTTACATACCAAACATGGATATTGTCTCAAATGCAAGCTGTACAACAAATTGTCTTGCACCTATTGCCAAGGTGGTGCATGAGGAATTTGGTATTGTGGAAGGTCTTATGACAACTGTTCATGCAACTACAGCAACTCAGAAGACTGTTGATGGACCTTCCATGAAGGATTGGCGAGGAGGCCGTGGAGCAGGTCAAAATATAATTCCTAGTTCGACAGGTGCTGCAAAGGCTGTAGGAAAAGTTCTCCCTGAACTTAATGGAAAACTTACTGGAATGGCATTCCGCGTTCCTACACCGAATGTATCTGTTGTGGACTTAACTTGTAGACTTCAGAAGAAGGCATCTTATGATGATGTAAAAGCTGTAATCAAGTATGCAGCTGAAGGTCCACTTAGAGGCATTCTCGGATACACTGATGAAGATGTTGTTTCCAATGATTTTGTTGGTGATTCAAGGTCAAGTATATTTGATGCCAAGGCCGGAATAGGTCTCAGCACCTCCTTCATGAAGCTCGTCGCATGGTACGACAACGAATGGGGATACAGCAATCGAGTGCTGGACCTGATAGAGCACATGGCGATGGTGGCGGCTCACAACTAA 1062 43.5 RTSRIRSIEPIKATATEAPRAVQSFGRIGRLVLRVAISRDDIDVVAVNDPFIDAKYMAYMFKYDSTHGGFKGTIKLLDDSILEINGKQIKVISKRDPAEVPWDGYGAEFVVESSGVFTTMEKASAHLKGGARKVVISAPSADAPMFVVGVNEKSYIPNMDIVSNASCTTNCLAPIAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLQKKASYDDVKAVIKYAAEGPLRGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSTSFMKLVAWYDNEWGYSNRVLDLIEHMAMVAAHN 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 18982348 18986214 + Bpe001840.1 Bpe15g00918 116597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00918 353 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 8 352 IPR020831 GO:0016620
Bpe15g00918 353 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 172 329 IPR020829 GO:0016620
Bpe15g00918 353 Gene3D Dihydrodipicolinate Reductase; domain 2 167 333 - -
Bpe15g00918 353 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 22 119 IPR020828 GO:0051287
Bpe15g00918 353 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 245 262 IPR020831 GO:0016620
Bpe15g00918 353 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 285 300 IPR020831 GO:0016620
Bpe15g00918 353 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 126 139 IPR020831 GO:0016620
Bpe15g00918 353 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 188 204 IPR020831 GO:0016620
Bpe15g00918 353 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 161 179 IPR020831 GO:0016620
Bpe15g00918 353 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 188 IPR036291 -
Bpe15g00918 353 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 8 352 - -
Bpe15g00918 353 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 22 341 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Bpe15g00918 353 Gene3D - 21 346 - -
Bpe15g00918 353 PIRSF GAPDH 21 351 IPR020831 GO:0016620
Bpe15g00918 353 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 165 172 IPR020830 GO:0016620
Bpe15g00918 353 SMART gp_dh_n_7 25 167 IPR020828 GO:0051287
Bpe15g00918 353 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 166 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00301 Bpe-Chr2:1986586 Bpe15g00918 Bpe-Chr15:18982348 9.99E-105 transposed
Bpe14g01342 Bpe-Chr14:10707432 Bpe15g00918 Bpe-Chr15:18982348 1.39E-99 transposed
Bpe15g00204 Bpe-Chr15:13118083 Bpe15g00918 Bpe-Chr15:18982348 6.44E-165 transposed
Bpe12g00035 Bpe-Chr12:298495 Bpe15g00918 Bpe-Chr15:18982348 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00918 K00134 - csv:101203472 620.157