Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00926 ATGTTCCACCCAAAGAAGCCATCAACTATGAATTCTCATGATCAAAGATCTTCTATGTGTGTCCAAGGTGACTCGGGACTAGTCCTAACCACCGACCCGAAGCCCCGCCTACGGTGGACTGCTGAGCTCCATGCTCGCTTTGTCGACGCAGTCACCCAGCTTGGAGGCCCTGATAAAGCAACCCCAAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTTACTCTTTACCACCTCAAAAGCCACCTTCAGAAATTTAGGCTTGGGAAGCAGCCTCATAAGGAATTCGCCGATCACTCCATGAAGCATGCTTCTTCGTTAGAACTTCAACGAAACGCAGCATCTTCATCAAATATTATTGGCCGCAATAAGAACGATAACTCGCACATGGTGGATGCAATTAAGATGCAGATGGAGGTGCAGAGAAGACTGCATGAACAACTAGAGGTGCAAAGACACCTTCAACTGAGAATCGAAGCACAAGGGAAGTACATGCAAAATATACTAGAAAAGGCTTGTCAAACTCTTGTCGGTGAGAATATGGGCTGTGGAGGATCGTCCTTTAAGACAATGGTTCCATGTTTTCAAGACCTGAACATTTGTGGTGGAGACCAGCTAGATCTGGAGCAAAATATAGATAATTTTCTTCCGGTCAATGACGATATTTGTCTCGAAAAGAAGGCAGGAAGCTCGTATAGCAATGGTGGAAAGAGCCCTCTTCTTTGGTCAGATGATCTTCAACTTCACATGTTGGGACCGACGATGACTTCTTCTGCTGGTTTTAAAGGAGAGAGAGTCGTCGATCTAGACTCCATTTCTGATATCTATGACAAAAAACCATAG 843 45.2 MFHPKKPSTMNSHDQRSSMCVQGDSGLVLTTDPKPRLRWTAELHARFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFADHSMKHASSLELQRNAASSSNIIGRNKNDNSHMVDAIKMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQNILEKACQTLVGENMGCGGSSFKTMVPCFQDLNICGGDQLDLEQNIDNFLPVNDDICLEKKAGSSYSNGGKSPLLWSDDLQLHMLGPTMTSSAGFKGERVVDLDSISDIYDKKP 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19025279 19026637 + Bpe001847.1 Bpe15g00926 116605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00926 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 91 IPR017930 -
Bpe15g00926 280 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Bpe15g00926 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 251 - -
Bpe15g00926 280 Pfam Myb-like DNA-binding domain 37 85 IPR001005 -
Bpe15g00926 280 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 34 89 IPR006447 GO:0003677
Bpe15g00926 280 Gene3D - 33 91 - -
Bpe15g00926 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 251 IPR044848 GO:0003700
Bpe15g00926 280 Pfam MYB-CC type transfactor, LHEQLE motif 130 175 IPR025756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00926 - - - vri:117908572 394.045
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00477 Bpe15g00926 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01644 Bpe-Chr11:12578540 Bpe15g00926 Bpe-Chr15:19025279 1.17E-48 dispersed
Bpe13g00855 Bpe-Chr13:14754415 Bpe15g00926 Bpe-Chr15:19025279 5.23E-71 dispersed
Bpe14g00844 Bpe-Chr14:6325672 Bpe15g00926 Bpe-Chr15:19025279 8.95E-69 dispersed
Bpe07g00477 Bpe-Chr7:8171923 Bpe15g00926 Bpe-Chr15:19025279 9.69E-109 transposed
Bpe12g00030 Bpe-Chr12:272030 Bpe15g00926 Bpe-Chr15:19025279 1.83E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1171 Blo04g00455 Blo13g00605 . . Bpe07g00477 . Bma08g00825 . . . . . . . . . . Bhi05g01981 Tan02g0015 Cmetu01g1460 Lac12g0030 . . . Cla02g01833 Cam02g1942 Cec02g1969 Cco02g2008 Clacu02g1922 Cmu02g1871 Cre02g2184 . . . . . Csa07g01218 . Cme11g01645 Blo15g00640 . . . Bpe15g00926 . Bma03g00488 Bma12g00569 Sed01g0770 . . . . . . Cpe15g00910 Cpe05g01028 Bhi10g00928 Tan05g0578 Cmetu11g1511 . Hepe08g0654 . . . . . . . . . . Csa06g01145 Chy11g01047 Cme01g01493
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe02g02281 CCT 2 243 G2-like Transcription Factor Family AT1G25550 54.1 2.8e-61 232.3
Bpe13g01332 CCT 1 253 G2-like Transcription Factor Family AT1G25550 52.9 6.9e-60 227.6
Bpe13g01332 CCT 1 295 G2-like Transcription Factor Family AT1G13300 50.2 2.0e-61 233.0
Bpe08g00093 . 1 269 G2-like Transcription Factor Family AT3G46640 51.1 1.3e-62 236.9
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 2.0e-72 269.2
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT5G05090 51.7 5.4e-70 261.2
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.0e-62 234.6
Bpe14g00844 . 6 293 G2-like Transcription Factor Family AT4G13640 54.4 1.1e-55 213.8
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe11g01644 . 1 191 G2-like Transcription Factor Family AT1G69580 50.3 1.3e-41 167.2
Bpe15g00926 CCT 1 279 G2-like Transcription Factor Family AT1G79430 54.4 4.2e-70 261.9
Bpe07g00477 CCT 1 274 G2-like Transcription Factor Family AT1G79430 58.5 4.1e-65 245.4
Bpe12g00030 . 1 221 G2-like Transcription Factor Family AT1G79430 55.9 7.0e-57 218.0
Bpe13g00855 . 36 201 G2-like Transcription Factor Family AT1G79430 61.3 4.6e-40 162.2
Bpe08g00040 . 66 302 G2-like Transcription Factor Family AT2G01060 54.4 7.4e-55 210.7
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 4.7e-95 344.7
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT3G10760 63.2 3.1e-91 332.0
Bpe02g00025 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 5.4e-64 241.1
Bpe04g00533 . 1 208 G2-like Transcription Factor Family AT2G40970 62.4 1.2e-60 229.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22637 PF00249 Myb_DNA-binding 2.80E-06 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00926 Bpe_Chr15 FPKM 13.457902 16.694223 13.571454 14.657816 15.442484 14.459504 14.430497 32.109798 31.552233 30.821804