Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00929 ATGAGCGCGGGAGATCTGCCAAAAAGGGAGGCAAATGTCCTCAAAGATCACGAAGGCGCCGTTTTAGCTACTAGGTTTCATGGCGATGGCAACTATTGTTTTACCTGCGGTAAGGATCGAACCATCTGTGTCTGGAATCCTCACCACGACATCCATATTATAACCTACAAATCTCATGGCCGTGAAGTTCGCGACGTCCACGTCACCGCGTACTCTCACTATCTCTCTCGTAGCTTGTGCTTGTGTTCTTGCGGTGGTGATATCATTGATGCATTTTTAGATGGTGTAATGTCTGTTTGTTTAACAAAAATTGGGAAGGACGGGGAAATAGAACGGCTGCATACAGAGTCATCTGAGATTCAAAGGACGAAAAGGGAGCTATTGGAGTTGGTTGAACAGAAGAACTTGGAAATCAGCGAAAAGAATAATACCATCAAGAGTTATCTGGATAAAATTGTTAGCTTCTCTGAATCTGCTGCTAAAAGGGAGGCTCGTTTAGGTGAGATTGAATCAGAATTGGTGCGTTCTCAAGCTACTTGTGCTCGTCTTGTGCAGGAGAAAGAACTCATAGAGAGGCATAATGTTTGGCTTAATGACGAGTTAACAACTAAAGTTGATAGTCTCATTGAGCTGAGAAGATCTCATTCTGATTTTGAAGCAGACATGTCTTCCAAGGTTTCAGATGTCCAGAGACAATTAGATGAATGCACTCGCTCATTACAGTGGAATAAGGACAGAGTCAGGGAGTTAGAAATTCAGTTAACATCCTTGCAAGAGGAATTATGCTCATCTAAAGATACTGCAGCAGTCAATGAGGAGCGGCTTTCCGCTGAACTCTCAACAGTAAATAAACTTGTTGAGCTTTATAAAGAAAGTTCTGATGAATGGTCCAGAAAGGCAGGTGGGCTAGAGGGGGTTGTAAAAGCCTTGGAGACGCATTTGACTCAAGTTGAAAGTGATTGCAAAGAGAAGCTTGAAAAAGAAGAATCTCTAAGAAAGCAATTTGAAAGGGAGGCTGCAAATTTGAAAATGAAACTTGAGGAGTGTGAAGCCGAAATGGAATCTAGTCGGAAAGAAAATGAGCTGAATCTGCTTCCACTCAGCCGCTTTACTTCAGACAGATGGATAAGTTCTCTTGGAACTGATGACGCAGTCAATGACAATCAGATGCTTATCCCCAAGATACCATTGGGCGTTTCTGGAACAGCCTTTGCAGCTTCGCTTTTGCGCGATGGATGGAGTCTGGCTAAAATGTATGCCAAATATCAAGAGACTGCTGATTCCCTGCGCCATGAGCAGTTAGGCAGAAAGGAAACTGAAGCTGTTTTGCAAAGGGTCTTGTATGAATTAGAGGAGAAAGCAGAAGTCATTTTGGATGAAAGAGCTGAACATGAGCGAATGGCTGAGGCATACTCCATGATAAATAAAAAATTGCAGAATTCTATATCTGAACAGGAAAGTTTGGAAAAAGCCATTCAAGAACTAAAGGCTGACTTGAGGAGGCACGAACGTGATTATTCCCTTGTTCAAAAAGAGAATATGGATCTCCAGAAGCAGGTAACTGTCCTTTTGAAGGAGTGTCGTGATATTCAACTTCGATGCGGATCTCGTATTTCCGAAAGTTTTGATAAGGGGTCAAATATTGCTTCCTTTGAGATGAATGTAGATACAGATGCTGAAAAAGTTGTATCAGAACGCCTTTTGACCTTTAAGGACATAAATGGATTGGTTGAGCAGAATGCTGAGCTGAGAAGCCTTGTTCGGAATCTTTCTAACCAGCTTGATAATAGAGAACTATTATTACAGGAGAAGTTGGAAGTGGAGATCAAGATTCGTACTGATGAAGCGGCATCAAAAGTTGCTGCTGTTTTACAGAGAGCTGAAGAGCAAGGGCGGATGATTGATTCCCTTCACTCTTCTGTTGCTATGTACAAAAGGCTCTATGAAGATGAGCAAACTCGAAATCTGACTCTGCCCAAACCTGCTGGAACTTCTCGAGAGGCTGGAAGAACAGACCTCAAGTTACTACTGGATAGTTCTCAGGAGGCTAGTAGAGTTGCCCAAGCGCAAGTTGCAGAACGTGTGAGATGTCTGGAAGAAGATCTGGCAAAGTCTAGGAGTGAAATTATTTCATTACGATCCGAACGTGACAAATTAAATCTCGAGGCCAGTTTCGCTAAAGGAAAGCTTGATAGTTTTGTAAAAGAATTTGAGCATCAGAGAGTTGAAATGAGCGGCATATTAGCTAGGAACGTTGAGTTTTCACATTTACTAATTGACTATCAAAAAAAAGTGCGTGAAAGGTCTGAATCCTTGCATGCTGCTGAGGAGATTTCTCGGAAGTTGAGCATGGAGGTATCTATTTTAAAGCATGAAAAGGAAATGATGTCAAGTGCTGAAAAGAGAGCCACTGATGAAATACGTTCACTTTCAGAGAGAGTATTCCGTCTACAGCAGGCTAGTTTGGACACTATTCACACGGTTGAAGACATTCGTGAGGAGGCAAGAGCTTCAGAAAGAAAAAAGCAAGAGGACTATGTTAAACATCTTGAGATTGAATGGGCTGATGCTAAGAAAGATCTGCTAGATGAACGAGAAAATGTTCGTGCTCTTACACTTGAGCGTGAGAAAATAATAAAGAATGCCATGACCCAAGTTGAAAATATGGGTAAAGAACTAGCTAGTGCTTTGCATGCAGTTGCAGCTGCTGAGGCACGAGCTGCAGTTGCAGAGGTGGATAAGAATCAGTGCATTGCTCTAAACACACCTATATATTTACTCAGAAACTTAAATAGGAATGGTATGGAATTGCGTATTGCTAAAGAAAACATTGAAAAATTTAAAGAAGAAGCACGAGCTAATAAGGATCATATGCTTCAGTATAAAAACATTGCTCAAGTAAATGAAGATGCCTTGAAACAGTTGGAATTCGCTCATGAGAACTTCAAGATTGAGGCTGACAAGCTCAGAACATCACTGGAAGCTGATCTCCTTTCACTTAGATCGAGGGTTTCGGATCTTGAAAATGAATTAATATTAAAATCAAAAGAAATGGCTTCTACTGTGGCTGGGAAAGAGGAAGCCCTCGCATCTTCTTTGACTGAAATTACCAGTCTGAAAGAAGAAATTGCAGCAAAAATTTCTCAAATCATCACATTTGAAATTCACACTTCTGCTTTGAGAGAAGAGTTAGAAAGAGAGCATCAGAAATGGCGGGATGCTCAAACCAATTACGAAAGACAGGTTATTCTCCAGTCGGAGACAATTCAGGAATTGACAAAAACCTCACAAGCATTGGCCAAACTTCAAGAGGAAACAGCCGAACTTCGGAGATCAGCAGATGTCCTCGAAAGTGAAAATAAAGAACTAAAGGCCAAATGGTTCACAGAGAAGGTCGCGCTAGAGGAATCGAGGAAGGAAGCTGAGAAAAAATACAATGATCTAAATGAACAGAACAAAATTTTGCATGGTCGGCTGGAGGCTTTGCACATACAATTTGCTGAGAAAGATCGCAATTCTGCTGGAATGTCCTACCCAAGCACTACTTCAGATCAGTCTGGGGAAGCTGGTTTACAAAATGTGATTAGTTATCTCAGAAGAACAAAAGAGATTGCAGAAACAGAGATCACTTTGTTAAAACAGGAAAAATTGCGATTGCAATCACAACTTGAAAGTGCTCTCAAAGCTGTGGAAACTGCACAAACATCACTTCATGCTGAACGTGCTACTTCAAGTGCCCGAGTGTTCACAGAGGAGGAAATCAAATCCTTACAACTTCAGATCAGAGAGATGAATTTACTTCGTGAAAGCAATGTGCAACTTCGAGAAGAAAACAAGCATAATTTTGAGGAATGCCAGAAATTGCAAGAAGTTACTCAAAAAGGTAGAGCGGAGGTTGAGAACCTTCAGACATTAGTGAAAGAAAAACAGGTGGAGATCGAATCCTTGAAGAAGATGGTTGAAACACAGAAGACAGAGAGATATCACCTCGAAAACAGAGTGTCAGAGTTACTTGATCGGACAAATCATGTGGACGTGGAGGACTATAATCAATTAAAAAATGTTGTTCAACAAATGAAGGATAAATTGAATGAAAAGGAAGTTCAATTGGAAGAACTTCATAAGCGTGTATCGGAGAGGCAGGGAGCAATATCCCAATTAGAGGAAGACCTTTCAAAGTGTAGAGTTGAGCTAAGTGAGAGGGAAAGGAGGTTGAATGATATTATAAAAATTGAGGCTACTCTTAAGCTAGACGTGGAGAAGCAGAAAAAGGCTTTAGCGCAGTATAAGAGGAAGTTTGAAGTCATTTCCAAGGAAAAAGAGGAACTGGTCGTGGAGAACCAAGCTCTTTCTAAGCAGATGGAGGATATCAAACAAGGTAGAAAAAAGCCTGGTGCGGATACTGCAGGTGAACAGGCCATGGAGGAGAAGGACACAAGAATTCAGATTCTGGAAAAGCATATGGAGAGGCTAAGGGAGGAACTAAAAAAGGAGAAGGGAGACAGTCAAGCAGAGAAAAACTTGCGATTGAATAATGAGAAGGCAATAGATCAAGCAAAGCTCATAAATGAACTAGAAAAGCACAAACGAGCCTTGAAGCAACTCTCTGACGAATTTGAAAAACTGAAGCTTTCAAAATCCAATCTTCCAGAGGATGCATCATTGGTTCAGCTTCTCTCAGGGACTGCCTTGGACGATCCTGCTTTATCCTATCTTTCAACGCTTGAAAGTCTTGAAAAGGCTGCACAGTCAATCCTTTCTAGTGAACTTGAAGATCATCAAGCTTCTCCAGAGACTTCGTTGATTGCTGACAGTACAAATGTTCCCACTCAGAATCCTGGATTTGCACCGTCTGTGGATGCTGGGATCATACATATACCTGGAAAAGCCACAGAAGAAACTGAGAAGAGACCTTGGCTCAAGACAAATATTGAAACCCGAAAAATAGCTAGGAAGTTGCTTCGGCCCCAAATGGCTAAACCTGATGAGCCACAGGCGGATGTAGAAATGGCTGAAATGGAACCACCAAACATAAGTGGAAAGTCCACCTCGCTGGTTCCTAGACTGACGCGCAAACGGTTAACTTCATCCAGTTCGGAAGTACATGAACATGTAGCCCTTCAAGGACTCCCTAGCACTGAAGTTACACCTATGTTGAAGAAATCTAAAGGTTCAGATTCCACACCTGAGGGTGCTGAAGGTCAATCAGTTGCCCCTTTGGAAAGCCTTGGAACTCAACCAGCTTCTGAAGAAGTTTCTGATATTTATGAGATTCCTCAGGGTTTAAGTGAGGAAGCTCTTGATGCTGAGCGAGAAGTGGTTGAAACGGCTAGGGAGAAGGTTGATGTACCAAAAGAAGAAGAATCAGATAAAACATATCAACTTGAGTATCAAACTTCAAGGAAGAATGATGAAGAGAATTTGGTTAGTGCAGCTGGAGCAGAGGTGGAAACAGATGATACGATTAAAGATCAGGCTGAGATAGAAAGTGGTCAACTGGTGGTAGAAAGTGGAAGCGAAAGAGAAGAGGGAGAGTTGTTGCCTGATGCAATCGACCACGAGATTAGTGGACATTTGATGGAGATTACTGAAGGAGGGGATGTCCCACCTGAGAGAGTTGTTACGCCATTGTTTCCATCAGTTAAGGCTGATAATGAATCTCTAGCTGCCACAGCACTGGAAGCTGGTGAGATAAATTCTCCAGAATCCCCTAATGAAGACAAGAATGATGGCGTTGATATAACTGAGGAAATCACTGGAGATGTAGACAACTTCGGTGAGGGGACAGCTGGAGGATTAGAGAAGTCCGACGATGGAAACGAAGAGGTTGCCGGAGAGGTAGCTCAGGTGGAAAGGAATTCAGGTGACAAAATTTCATCTACCACTGTTGTAGAAGCTAATCTTTCCAGAAGAGCCAGTCCTAGTGTCACCGGCGAAGCTAGGGAGGTGAGGCGGATCTCTCCTCCAGGGAATACTTCAACTACTATAAACTTGCAGGAGAGAGCAAAGGAGAGGGCTTTGCTTAGGCAGGCTGCAGTGATGTCCCCTTCACCCAGTCGAGGACGTGGAAGAACAACAGTCCGTGGTCGGGTTGCGAGAGGCGGACGTACAGCTCGAGGAGGCCGTAGCCAACCGGGTGAACATAATTAA 6150 42.42 MSAGDLPKREANVLKDHEGAVLATRFHGDGNYCFTCGKDRTICVWNPHHDIHIITYKSHGREVRDVHVTAYSHYLSRSLCLCSCGGDIIDAFLDGVMSVCLTKIGKDGEIERLHTESSEIQRTKRELLELVEQKNLEISEKNNTIKSYLDKIVSFSESAAKREARLGEIESELVRSQATCARLVQEKELIERHNVWLNDELTTKVDSLIELRRSHSDFEADMSSKVSDVQRQLDECTRSLQWNKDRVRELEIQLTSLQEELCSSKDTAAVNEERLSAELSTVNKLVELYKESSDEWSRKAGGLEGVVKALETHLTQVESDCKEKLEKEESLRKQFEREAANLKMKLEECEAEMESSRKENELNLLPLSRFTSDRWISSLGTDDAVNDNQMLIPKIPLGVSGTAFAASLLRDGWSLAKMYAKYQETADSLRHEQLGRKETEAVLQRVLYELEEKAEVILDERAEHERMAEAYSMINKKLQNSISEQESLEKAIQELKADLRRHERDYSLVQKENMDLQKQVTVLLKECRDIQLRCGSRISESFDKGSNIASFEMNVDTDAEKVVSERLLTFKDINGLVEQNAELRSLVRNLSNQLDNRELLLQEKLEVEIKIRTDEAASKVAAVLQRAEEQGRMIDSLHSSVAMYKRLYEDEQTRNLTLPKPAGTSREAGRTDLKLLLDSSQEASRVAQAQVAERVRCLEEDLAKSRSEIISLRSERDKLNLEASFAKGKLDSFVKEFEHQRVEMSGILARNVEFSHLLIDYQKKVRERSESLHAAEEISRKLSMEVSILKHEKEMMSSAEKRATDEIRSLSERVFRLQQASLDTIHTVEDIREEARASERKKQEDYVKHLEIEWADAKKDLLDERENVRALTLEREKIIKNAMTQVENMGKELASALHAVAAAEARAAVAEVDKNQCIALNTPIYLLRNLNRNGMELRIAKENIEKFKEEARANKDHMLQYKNIAQVNEDALKQLEFAHENFKIEADKLRTSLEADLLSLRSRVSDLENELILKSKEMASTVAGKEEALASSLTEITSLKEEIAAKISQIITFEIHTSALREELEREHQKWRDAQTNYERQVILQSETIQELTKTSQALAKLQEETAELRRSADVLESENKELKAKWFTEKVALEESRKEAEKKYNDLNEQNKILHGRLEALHIQFAEKDRNSAGMSYPSTTSDQSGEAGLQNVISYLRRTKEIAETEITLLKQEKLRLQSQLESALKAVETAQTSLHAERATSSARVFTEEEIKSLQLQIREMNLLRESNVQLREENKHNFEECQKLQEVTQKGRAEVENLQTLVKEKQVEIESLKKMVETQKTERYHLENRVSELLDRTNHVDVEDYNQLKNVVQQMKDKLNEKEVQLEELHKRVSERQGAISQLEEDLSKCRVELSERERRLNDIIKIEATLKLDVEKQKKALAQYKRKFEVISKEKEELVVENQALSKQMEDIKQGRKKPGADTAGEQAMEEKDTRIQILEKHMERLREELKKEKGDSQAEKNLRLNNEKAIDQAKLINELEKHKRALKQLSDEFEKLKLSKSNLPEDASLVQLLSGTALDDPALSYLSTLESLEKAAQSILSSELEDHQASPETSLIADSTNVPTQNPGFAPSVDAGIIHIPGKATEETEKRPWLKTNIETRKIARKLLRPQMAKPDEPQADVEMAEMEPPNISGKSTSLVPRLTRKRLTSSSSEVHEHVALQGLPSTEVTPMLKKSKGSDSTPEGAEGQSVAPLESLGTQPASEEVSDIYEIPQGLSEEALDAEREVVETAREKVDVPKEEESDKTYQLEYQTSRKNDEENLVSAAGAEVETDDTIKDQAEIESGQLVVESGSEREEGELLPDAIDHEISGHLMEITEGGDVPPERVVTPLFPSVKADNESLAATALEAGEINSPESPNEDKNDGVDITEEITGDVDNFGEGTAGGLEKSDDGNEEVAGEVAQVERNSGDKISSTTVVEANLSRRASPSVTGEAREVRRISPPGNTSTTINLQERAKERALLRQAAVMSPSPSRGRGRTTVRGRVARGGRTARGGRSQPGEHN 2049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19045251 19083647 + Bpe001850.1 Bpe15g00929 116608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00929 2049 Coils Coil 990 1010 - -
Bpe15g00929 2049 Coils Coil 447 467 - -
Bpe15g00929 2049 SMART WD40_4 7 46 IPR001680 GO:0005515
Bpe15g00929 2049 Coils Coil 573 596 - -
Bpe15g00929 2049 Coils Coil 478 519 - -
Bpe15g00929 2049 MobiDBLite consensus disorder prediction 1455 1476 - -
Bpe15g00929 2049 Coils Coil 307 359 - -
Bpe15g00929 2049 SUPERFAMILY WD40 repeat-like 8 85 IPR036322 GO:0005515
Bpe15g00929 2049 Coils Coil 930 957 - -
Bpe15g00929 2049 MobiDBLite consensus disorder prediction 1953 1974 - -
Bpe15g00929 2049 Coils Coil 1412 1460 - -
Bpe15g00929 2049 Coils Coil 1061 1081 - -
Bpe15g00929 2049 Gene3D - 5 127 IPR015943 GO:0005515
Bpe15g00929 2049 MobiDBLite consensus disorder prediction 1895 1994 - -
Bpe15g00929 2049 MobiDBLite consensus disorder prediction 1901 1915 - -
Bpe15g00929 2049 MobiDBLite consensus disorder prediction 1591 1620 - -
Bpe15g00929 2049 PANTHER NUCLEOPROTEIN TPR 103 2039 - -
Bpe15g00929 2049 MobiDBLite consensus disorder prediction 2011 2049 - -
Bpe15g00929 2049 Coils Coil 1202 1229 - -
Bpe15g00929 2049 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 46 IPR001680 GO:0005515
Bpe15g00929 2049 PANTHER NUCLEOPROTEIN TPR-RELATED 103 2039 - -
Bpe15g00929 2049 MobiDBLite consensus disorder prediction 1591 1614 - -
Bpe15g00929 2049 Coils Coil 1085 1158 - -
Bpe15g00929 2049 Coils Coil 1299 1326 - -
Bpe15g00929 2049 MobiDBLite consensus disorder prediction 1718 1732 - -
Bpe15g00929 2049 Coils Coil 695 722 - -
Bpe15g00929 2049 Coils Coil 1474 1508 - -
Bpe15g00929 2049 Coils Coil 1346 1404 - -
Bpe15g00929 2049 MobiDBLite consensus disorder prediction 1675 1807 - -
Bpe15g00929 2049 Coils Coil 240 260 - -
Bpe15g00929 2049 Coils Coil 113 151 - -
Bpe15g00929 2049 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 46 - -
Bpe15g00929 2049 MobiDBLite consensus disorder prediction 1764 1803 - -
Bpe15g00929 2049 Coils Coil 1518 1545 - -
Bpe15g00929 2049 MobiDBLite consensus disorder prediction 1677 1694 - -
Bpe15g00929 2049 Pfam TPR/MLP1/MLP2-like protein 1035 1162 IPR012929 GO:0006606
Bpe15g00929 2049 Coils Coil 1247 1277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00929 K09291 TPR, MLP1, MLP2; nucleoprotein TPR - jre:108979354 2130.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00188 Bpe-Chr6:5594891 Bpe15g00929 Bpe-Chr15:19045251 1.87E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1185 . . . . . . . . . . . . . . . . . Bhi05g01976 . . Lac12g0024 Hepe02g0006 . . . . . . . . . . . . . . Csa07g01225 . . . . . . Bpe15g00929 . Bma03g00486 . . . . . . . . Cpe15g00913 . . . . . . . . . . . . . . . . . Chy01g00837 Cme01g01492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004038 1 2 1 1 1 1 1 2 2 3 1 1 1 3 2 1 1 1 1 1 1 1 1 3 3 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00929 Bpe_Chr15 FPKM 4.805406 4.84832 5.186458 5.226189 4.204461 3.032595 4.054663 3.824446 4.111392 3.961391