Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00932 ATGGCCAATCAACTATACGCCTACAATCTCTCTTCATTCGGGACGGCACCTCATGCTGCTCCTGCTCCTGATCCTGCTCCTGCTCCTGCTCCGTCGTCTTTTTCCAGTATATTCTCGTCCTCGCGTTCCCTATCGGATATTGTCTCTACTCGCTACCTCCTCTCTGACTCACTCGCTTCCAATCTCGCTAGCAAGTACTCCACTGCCACTGATCCAAGTGCTTCTATGTATTTGAACCAGAGCGATGTCCTCAGGTTTGCTTCCTCCCAGAATGCCTCCCGAACTCCGCATTATGTCCCCCAATCTCCATGGCATGGTTCTGACGTAGAGCCTGAACTCGACTCTGTTTCCGGGATGAAACGTTCTTCTGATGTGCCGTACGAGACTATTTTGGGTACCCGTAACACGATTGGGCCAAGTCAAGCTTGGTACACTACAAATTCTTTAGCCAAGCGCACTAGATTTGAAAGCGCAAGCAATATTCCTTTATATCCACAGAGGCCAGGGGAGAAGGACTGTGCCCATTATATGCTCACAAGAACATGTGGATTTGGAAATAGCTGCAAGTTTGATCATCCTATTTGGGTTCCTGAAGGTGGAATTCCAGATTGGAAAGAGGTTCCACAGATAGCCACAGATGAATCGCTTCCTGAAAGACCTGGGGAGCCAGATTGTCCTTACTTTTTGAAGACTCAAAGATGCAAATTTGGTTTAAGATGCAAGTTTAATCATCCAAAAGATCAATTAGCTTCTACAGATGCTTCAGAGAATACTGACATCTCTGCATTGCCTGAGAGACCATCAGAACCTCTCTGTGCATTTTATATGAAGACTGGAAAATGTAAGTTTGGTGTAATCTGCAAATTCCATCACCCAAAAGAATTACTTGTGCAATCAGCCGAACAAGAGAATTGTAATGGTGGACAGGCGGAATCATCAGGAGTTAAGGAAGAAGGAGCAAGTGGAGATCTAAAGCTTTTCAAGTCTCCTGTTCCATTTACAGCAGCATTGTCCTATAACTCCAAAGGACTTCCAATAAGACCGGAAGAAGTTGATTGTCCGTTCTATATAAAAACTGGCAGTTGCAAGTATGGTGTAACTTGCCGATACAATCACCCTGACAGAAATGCAATCTTTCAGTCTTCAGCATCACTTGTTCATCCTTTTGTTGCTCCAGCATCGGCTTATTTGAATACCGGAGCTGTTAGTTCCATTTACCAAAGCATTGACCTCAGATTGGTTCATCAAGTGGCAGGAGCGGGTTCAAGCTCAACTATGTACCCTCAACGACCTGGGCAAAGTGAATGTGATTATTATATGAAGACTGGGGTGTGTAAGTTTGGGGAGAGATGCAAATTTCATCACCCAGTTGATCGTTCAACTCCAAATGCAAAGAATGTTGCCCAGCCAAATGTCAAACTGACTCTTGCAGGATTACCCAGGAGGGAGGGTGCAATCATGTGTCCGTATTATCTGAAAACGGGCACTTGCAAGTATGGTGCAACATGCAAGTTTGACCATCCACCGCCCGGAGAGGTGATGGCAATGGCTTCGCAAGGAACATCCACGGCCGATAAAAGTGAAGGCAAAGGAGAAGAGTAA 1602 45.44 MANQLYAYNLSSFGTAPHAAPAPDPAPAPAPSSFSSIFSSSRSLSDIVSTRYLLSDSLASNLASKYSTATDPSASMYLNQSDVLRFASSQNASRTPHYVPQSPWHGSDVEPELDSVSGMKRSSDVPYETILGTRNTIGPSQAWYTTNSLAKRTRFESASNIPLYPQRPGEKDCAHYMLTRTCGFGNSCKFDHPIWVPEGGIPDWKEVPQIATDESLPERPGEPDCPYFLKTQRCKFGLRCKFNHPKDQLASTDASENTDISALPERPSEPLCAFYMKTGKCKFGVICKFHHPKELLVQSAEQENCNGGQAESSGVKEEGASGDLKLFKSPVPFTAALSYNSKGLPIRPEEVDCPFYIKTGSCKYGVTCRYNHPDRNAIFQSSASLVHPFVAPASAYLNTGAVSSIYQSIDLRLVHQVAGAGSSSTMYPQRPGQSECDYYMKTGVCKFGERCKFHHPVDRSTPNAKNVAQPNVKLTLAGLPRREGAIMCPYYLKTGTCKYGATCKFDHPPPGEVMAMASQGTSTADKSEGKGEE 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19089342 19105323 + Bpe024593 Bpe15g00932 116611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00932 533 SUPERFAMILY CCCH zinc finger 431 459 IPR036855 GO:0046872
Bpe15g00932 533 SMART c3hfinal6 482 509 IPR000571 GO:0046872
Bpe15g00932 533 SMART c3hfinal6 219 246 IPR000571 GO:0046872
Bpe15g00932 533 SMART c3hfinal6 266 293 IPR000571 GO:0046872
Bpe15g00932 533 SMART c3hfinal6 167 194 IPR000571 GO:0046872
Bpe15g00932 533 SMART c3hfinal6 430 457 IPR000571 GO:0046872
Bpe15g00932 533 SMART c3hfinal6 347 374 IPR000571 GO:0046872
Bpe15g00932 533 ProSiteProfiles Zinc finger C3H1-type profile. 347 375 IPR000571 GO:0046872
Bpe15g00932 533 ProSiteProfiles Zinc finger C3H1-type profile. 430 458 IPR000571 GO:0046872
Bpe15g00932 533 Gene3D - 263 386 - -
Bpe15g00932 533 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 77 520 - -
Bpe15g00932 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 246 IPR000571 GO:0046872
Bpe15g00932 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 169 193 IPR000571 GO:0046872
Bpe15g00932 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 293 IPR000571 GO:0046872
Bpe15g00932 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 432 456 IPR000571 GO:0046872
Bpe15g00932 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 488 509 IPR000571 GO:0046872
Bpe15g00932 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 373 IPR000571 GO:0046872
Bpe15g00932 533 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872
Bpe15g00932 533 Gene3D - 428 523 - -
Bpe15g00932 533 Gene3D - 166 262 - -
Bpe15g00932 533 ProSiteProfiles Zinc finger C3H1-type profile. 482 510 IPR000571 GO:0046872
Bpe15g00932 533 SUPERFAMILY CCCH zinc finger 269 294 IPR036855 GO:0046872
Bpe15g00932 533 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872
Bpe15g00932 533 SUPERFAMILY CCCH zinc finger 349 374 IPR036855 GO:0046872
Bpe15g00932 533 ProSiteProfiles Zinc finger C3H1-type profile. 167 195 IPR000571 GO:0046872
Bpe15g00932 533 SUPERFAMILY CCCH zinc finger 486 509 IPR036855 GO:0046872
Bpe15g00932 533 SUPERFAMILY CCCH zinc finger 224 249 IPR036855 GO:0046872
Bpe15g00932 533 PANTHER CCCH ZINC FINGER/TIS11-RELATED 77 520 IPR045877 GO:0003729
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00932 Bpe-Chr15:19089342 Bpe09g00685 Bpe-Chr9:15427289 1.00E-12 dispersed
Bpe12g00024 Bpe-Chr12:237679 Bpe15g00932 Bpe-Chr15:19089342 2.55E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22638 PF00642 zf-CCCH 8.60E-11 CL0537 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00932 - - csv:101212896 661.759