Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00932 ATGGCCAATCAACTATACGCCTACAATCTCTCTTCATTCGGGACGGCACCTCATGCTGCTCCTGCTCCTGATCCTGCTCCTGCTCCTGCTCCGTCGTCTTTTTCCAGTATATTCTCGTCCTCGCGTTCCCTATCGGATATTGTCTCTACTCGCTACCTCCTCTCTGACTCACTCGCTTCCAATCTCGCTAGCAAGTACTCCACTGCCACTGATCCAAGTGCTTCTATGTATTTGAACCAGAGCGATGTCCTCAGGTTTGCTTCCTCCCAGAATGCCTCCCGAACTCCGCATTATGTCCCCCAATCTCCATGGCATGGTTCTGACGTAGAGCCTGAACTCGACTCTGTTTCCGGGATGAAACGTTCTTCTGATGTGCCGTACGAGACTATTTTGGGTACCCGTAACACGATTGGGCCAAGTCAAGCTTGGTACACTACAAATTCTTTAGCCAAGCGCACTAGATTTGAAAGCGCAAGCAATATTCCTTTATATCCACAGAGGCCAGGGGAGAAGGACTGTGCCCATTATATGCTCACAAGAACATGTGGATTTGGAAATAGCTGCAAGTTTGATCATCCTATTTGGGTTCCTGAAGGTGGAATTCCAGATTGGAAAGAGGTTCCACAGATAGCCACAGATGAATCGCTTCCTGAAAGACCTGGGGAGCCAGATTGTCCTTACTTTTTGAAGACTCAAAGATGCAAATTTGGTTTAAGATGCAAGTTTAATCATCCAAAAGATCAATTAGCTTCTACAGATGCTTCAGAGAATACTGACATCTCTGCATTGCCTGAGAGACCATCAGAACCTCTCTGTGCATTTTATATGAAGACTGGAAAATGTAAGTTTGGTGTAATCTGCAAATTCCATCACCCAAAAGAATTACTTGTGCAATCAGCCGAACAAGAGAATTGTAATGGTGGACAGGCGGAATCATCAGGAGTTAAGGAAGAAGGAGCAAGTGGAGATCTAAAGCTTTTCAAGTCTCCTGTTCCATTTACAGCAGCATTGTCCTATAACTCCAAAGGACTTCCAATAAGACCGGAAGAAGTTGATTGTCCGTTCTATATAAAAACTGGCAGTTGCAAGTATGGTGTAACTTGCCGATACAATCACCCTGACAGAAATGCAATCTTTCAGTCTTCAGCATCACTTGTTCATCCTTTTGTTGCTCCAGCATCGGCTTATTTGAATACCGGAGCTGTTAGTTCCATTTACCAAAGCATTGACCTCAGATTGGTTCATCAAGTGGCAGGAGCGGGTTCAAGCTCAACTATGTACCCTCAACGACCTGGGCAAAGTGAATGTGATTATTATATGAAGACTGGGGTGTGTAAGTTTGGGGAGAGATGCAAATTTCATCACCCAGTTGATCGTTCAACTCCAAATGCAAAGAATGTTGCCCAGCCAAATGTCAAACTGACTCTTGCAGGATTACCCAGGAGGGAGGGTGCAATCATGTGTCCGTATTATCTGAAAACGGGCACTTGCAAGTATGGTGCAACATGCAAGTTTGACCATCCACCGCCCGGAGAGGTGATGGCAATGGCTTCGCAAGGAACATCCACGGCCGATAAAAGTGAAGGCAAAGGAGAAGAGTAA 1602 45.44 MANQLYAYNLSSFGTAPHAAPAPDPAPAPAPSSFSSIFSSSRSLSDIVSTRYLLSDSLASNLASKYSTATDPSASMYLNQSDVLRFASSQNASRTPHYVPQSPWHGSDVEPELDSVSGMKRSSDVPYETILGTRNTIGPSQAWYTTNSLAKRTRFESASNIPLYPQRPGEKDCAHYMLTRTCGFGNSCKFDHPIWVPEGGIPDWKEVPQIATDESLPERPGEPDCPYFLKTQRCKFGLRCKFNHPKDQLASTDASENTDISALPERPSEPLCAFYMKTGKCKFGVICKFHHPKELLVQSAEQENCNGGQAESSGVKEEGASGDLKLFKSPVPFTAALSYNSKGLPIRPEEVDCPFYIKTGSCKYGVTCRYNHPDRNAIFQSSASLVHPFVAPASAYLNTGAVSSIYQSIDLRLVHQVAGAGSSSTMYPQRPGQSECDYYMKTGVCKFGERCKFHHPVDRSTPNAKNVAQPNVKLTLAGLPRREGAIMCPYYLKTGTCKYGATCKFDHPPPGEVMAMASQGTSTADKSEGKGEE 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19089342 19105323 + Bpe024593 Bpe15g00932 116611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00932 533 SUPERFAMILY CCCH zinc finger 431 459 IPR036855 GO:0046872
Bpe15g00932 533 SMART c3hfinal6 482 509 IPR000571 GO:0046872
Bpe15g00932 533 SMART c3hfinal6 219 246 IPR000571 GO:0046872
Bpe15g00932 533 SMART c3hfinal6 266 293 IPR000571 GO:0046872
Bpe15g00932 533 SMART c3hfinal6 167 194 IPR000571 GO:0046872
Bpe15g00932 533 SMART c3hfinal6 430 457 IPR000571 GO:0046872
Bpe15g00932 533 SMART c3hfinal6 347 374 IPR000571 GO:0046872
Bpe15g00932 533 ProSiteProfiles Zinc finger C3H1-type profile. 347 375 IPR000571 GO:0046872
Bpe15g00932 533 ProSiteProfiles Zinc finger C3H1-type profile. 430 458 IPR000571 GO:0046872
Bpe15g00932 533 Gene3D - 263 386 - -
Bpe15g00932 533 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 77 520 - -
Bpe15g00932 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 246 IPR000571 GO:0046872
Bpe15g00932 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 169 193 IPR000571 GO:0046872
Bpe15g00932 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 293 IPR000571 GO:0046872
Bpe15g00932 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 432 456 IPR000571 GO:0046872
Bpe15g00932 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 488 509 IPR000571 GO:0046872
Bpe15g00932 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 373 IPR000571 GO:0046872
Bpe15g00932 533 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872
Bpe15g00932 533 Gene3D - 428 523 - -
Bpe15g00932 533 Gene3D - 166 262 - -
Bpe15g00932 533 ProSiteProfiles Zinc finger C3H1-type profile. 482 510 IPR000571 GO:0046872
Bpe15g00932 533 SUPERFAMILY CCCH zinc finger 269 294 IPR036855 GO:0046872
Bpe15g00932 533 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872
Bpe15g00932 533 SUPERFAMILY CCCH zinc finger 349 374 IPR036855 GO:0046872
Bpe15g00932 533 ProSiteProfiles Zinc finger C3H1-type profile. 167 195 IPR000571 GO:0046872
Bpe15g00932 533 SUPERFAMILY CCCH zinc finger 486 509 IPR036855 GO:0046872
Bpe15g00932 533 SUPERFAMILY CCCH zinc finger 224 249 IPR036855 GO:0046872
Bpe15g00932 533 PANTHER CCCH ZINC FINGER/TIS11-RELATED 77 520 IPR045877 GO:0003729
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00932 - - - csv:101212896 661.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00932 Bpe-Chr15:19089342 Bpe09g00685 Bpe-Chr9:15427289 1.00E-12 dispersed
Bpe12g00024 Bpe-Chr12:237679 Bpe15g00932 Bpe-Chr15:19089342 2.55E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1194 Blo04g00450 Blo13g00612 . . . . Bma08g00829 . . . . . . . . . . Bhi05g01975 Tan02g0011 . . . . . . . . . . . . . . . . . Csa07g01227 . . . . . . Bpe15g00932 . Bma03g00483 . . . . . . . . Cpe15g00914 . . . . . . . . . . . . . . . . . Chy01g00832 Cme01g01486
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004512 1 5 3 1 2 2 0 1 2 1 1 1 0 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22638 PF00642 zf-CCCH 8.60E-11 CL0537 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00932 Bpe_Chr15 FPKM 111.227219 122.171677 108.462341 110.934845 33.237831 37.567471 31.893858 120.420586 119.659164 118.751656