Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00934 ATGACAGACAATGGACACCTGACAGTGCCGCCGGGTTTCAGATTCCACCCGACGGACGAGGAGCTTCTGCACTATTACCTCAGAAAGAAGGTCTCTTATGAAGCCAATGACCTTGACGTTATTAGGGAAGTTGATCTCAACAAACTCGAGCCATGGGACCTTAAAGAGAAATGCAGAATCGGAAGTGGGCAAGAGAGCGAGTGGTATTTCTTCAGCCACAAGGATAAGAAATATCCAACTGGAACTCGAACAAATAGGGCAACCACGGCTGGGTTCTGGAAGGCTACTGGGAGGGACAAGCCTATCCATGTCCCTGAATATTCTAAGAAGATCGGCATGAGGAAGACCCTCGTCTTCTACACCGGCCGAGCTCCTCACGGCCACAAAACAGATTGGATCATGCACGAATATCGCCTTGACGATCAAAACAGCGATCAACTTCAGGAGGAAGGCTGGGTAGTCTGTAGGGTTTTCAAAAAGAAAAACTATAGCCGAACCTTCCAACCAGAATCTTCTCAAGAGAACTCGAAGAACCAGGCCCAGAAGGGAAGTACAAGCTCAGGCCAATTAATCGTAGAGACGACGAAACGTAATCAAATGCAAGCCGCGTCGCATGACTACGGCTTCGAAACCTTCCTGCAGCTGCCGCAGCTATTCAGCCCAGAATCAGTGGTCGGAGCTCCGTCTTTCGCCTCTTCGATATCTTTGAACACGACGATGGGATCGATTGGGTATCCTCAATTCTGTAGAAGCTCGCAAGCGGAAAGGTATGGGGATTGGTCGTTTTTGGACAAGCTGCTAGCTTCCAACAGTGGAGTGGATCAGCAAAGCCCGAGTAAAATGGTACCTTTCCACCACGTAGTAGATTCAACCCAGAATTTGCTGTTCCAATACCTTGGAGCAGGAAGTAGTTGTCCTGAGACTGACGTTTTGACATTGCCGAGGTAA 948 48.84 MTDNGHLTVPPGFRFHPTDEELLHYYLRKKVSYEANDLDVIREVDLNKLEPWDLKEKCRIGSGQESEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIHVPEYSKKIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDDQNSDQLQEEGWVVCRVFKKKNYSRTFQPESSQENSKNQAQKGSTSSGQLIVETTKRNQMQAASHDYGFETFLQLPQLFSPESVVGAPSFASSISLNTTMGSIGYPQFCRSSQAERYGDWSFLDKLLASNSGVDQQSPSKMVPFHHVVDSTQNLLFQYLGAGSSCPETDVLTLPR 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19111582 19112964 - Bpe001856.1 Bpe15g00934 116613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00934 315 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Bpe15g00934 315 MobiDBLite consensus disorder prediction 166 188 - -
Bpe15g00934 315 PANTHER PROTEIN SOMBRERO 5 290 - -
Bpe15g00934 315 ProSiteProfiles NAC domain profile. 9 160 IPR003441 GO:0003677|GO:0006355
Bpe15g00934 315 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Bpe15g00934 315 SUPERFAMILY NAC domain 7 160 IPR036093 GO:0003677|GO:0006355
Bpe15g00934 315 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00905 Bpe-Chr8:11491250 Bpe15g00934 Bpe-Chr15:19111582 2.29E-89 dispersed
Bpe11g00257 Bpe-Chr11:1851372 Bpe15g00934 Bpe-Chr15:19111582 1.95E-81 dispersed
Bpe15g00466 Bpe-Chr15:16043450 Bpe15g00934 Bpe-Chr15:19111582 1.90E-83 dispersed
Bpe12g00023 Bpe-Chr12:234919 Bpe15g00934 Bpe-Chr15:19111582 6.82E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22639 PF02365 NAM 5.80E-38 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00934 - - vri:117910911 366.311