Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00954 ATGTCTAATTCGGAAGGTGGTAATAACGGCGTCGTCAACGGCGCTTTAATTGACCCTCAGAGGCAACAGCCGCCGGCGAATGGAGCGCTTGTTGTCAAAAAGCCGCCCTCTAAAGACCGCCACAGTAAGGTCGACGGTCGAGGTCGCCGTATTCGGATGCCGATCATTTGCGCCGCCCGTGTGTTTCAGCTCACTAGAGAGCTTGGACACAAGTCCGATGGTCAGACTATCGAGTGGCTTCTAAGGCAAGCTGAGCCTTCGATCATAGCTGCGACGGGAACTGGTACTACTCCTGCCAGCTTCTCTTCAGTTTCCGTATCCGTCAGAGGCGGCGGCGTCGGTTCGAGTTCGCTCTCTACCTCTTCCACTACGTCCTCTCTATCCCTTTCTCGGCCCCAGGCCTTCTCCGGACCCACCCCCTTTATTCTCGGTAAGCGTGTAAGAACCGACGACGACGGAGGAGCTGGAGCTAAGGACGAAGTTGTATCCGTCGGTCCCACGATGGGTTCCATAGTGGGTCCCTCCGCCGCCGGTGGATACTGGGCCATTCCGGCCAGACCGGACTTTGGGCAGATTTGGAGCTTTGCTACGGGGACGGCAGCGCCGGAATTGATCCACCCTTCCGCGGTGACTCATCAGGGCTCTCTATTTGTTCAGCAGCAACAGGCGATTGGAGAGGCTTCGGCGGCACGGGTGGGGAATTACCTTCCGGGACATTTGAATTTACTGGCTTCGTTATCAGGTGGAACCGGCAATTCAGGTCGGAGAGAAGATGACCAACGTTAA 786 56.62 MSNSEGGNNGVVNGALIDPQRQQPPANGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSVRGGGVGSSSLSTSSTTSSLSLSRPQAFSGPTPFILGKRVRTDDDGGAGAKDEVVSVGPTMGSIVGPSAAGGYWAIPARPDFGQIWSFATGTAAPELIHPSAVTHQGSLFVQQQQAIGEASAARVGNYLPGHLNLLASLSGGTGNSGRREDDQR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19232675 19233460 - Bpe001875.1 Bpe15g00954 116633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00954 261 MobiDBLite consensus disorder prediction 34 49 - -
Bpe15g00954 261 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 258 - -
Bpe15g00954 261 MobiDBLite consensus disorder prediction 112 132 - -
Bpe15g00954 261 ProSiteProfiles TCP domain profile. 37 91 IPR017887 -
Bpe15g00954 261 MobiDBLite consensus disorder prediction 1 49 - -
Bpe15g00954 261 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 258 IPR005333 GO:0003700
Bpe15g00954 261 Pfam TCP family transcription factor 37 121 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00954 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - cpap:110813909 340.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g00954 Bpe-Chr15:19232675 Bpe11g01829 Bpe-Chr11:14709891 1.61E-37 dispersed
Bpe12g00011 Bpe-Chr12:139554 Bpe15g00954 Bpe-Chr15:19232675 5.47E-148 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00011 . 35 261 TCP Transcription Factor Family AT5G23280 54.0 2.3e-54 209.1
Bpe15g00954 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.6e-52 203.0
Bpe08g01471 BCT 92 370 TCP Transcription Factor Family AT2G45680 50.3 1.5e-54 210.3
Bpe15g00605 BCT,CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 82.7 3.3e-41 166.4
Bpe09g00550 . 1 287 TCP Transcription Factor Family AT3G27010 53.1 7.3e-66 247.7
Bpe11g01485 . 6 257 TCP Transcription Factor Family AT3G27010 55.4 5.0e-59 224.9
Bpe15g00954 . 1 259 TCP Transcription Factor Family AT5G08330 51.6 5.9e-60 227.6
Bpe12g00011 . 1 259 TCP Transcription Factor Family AT5G08330 51.8 1.5e-58 223.0
Bpe12g00521 CCT 27 126 TCP Transcription Factor Family AT5G60970 77.2 1.9e-38 156.8
Bpe14g00144 . 29 154 TCP Transcription Factor Family AT3G02150 65.4 9.5e-38 154.5
Bpe15g00176 BCT,CCT,ECH 8 191 TCP Transcription Factor Family AT2G31070 53.8 6.4e-42 168.3
Bpe12g00269 . 14 198 TCP Transcription Factor Family AT2G31070 53.5 2.7e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22641 PF03634 TCP 2.40E-32 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g00954 Bpe_Chr15 FPKM 4.455939 3.443235 67.073639 67.62809 1.32798 1.602706 0.621993 159.12236 166.149353 167.052673