Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g00979 ATGGCGTCTGGAACTGGAATTCCATACTTTGAAGATGTGAGGAGTAAACCTGAGGTTGTTGACCCTCCTCAAAATGAAGATATGATGGATGTTGGTGAAAACGTGAATGATCCTGCTCACAGCGGCTCAAAACCTAACTTGACTGTTTCTAGCAGTGTTCGAGACCTGTTGGAATGTCCTGTGTGTTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCAAATGGTCATACGCTGTGCTCTGGTTGCAAGCCCAGGGTGCACAACCGGTGCCCCACTTGTAGGCATGAGCTTGGCAATATTAGATGTCTAGCGCTGGAGAAGGTGGCTGCATCTCTAGAACTTCCATGTAAATACGAGGGCTTCGGTTGCTTGGGCATTTATCCTTATTACAGCAAGCTTAAACATGAATCCCAGTGTGTTTATAGGCCTTATAATTGCCCCTATGCCGGATCAGAATGTATAGTCCTTGGTGATATACCTTATCTGGTGTCACACCTAAAGGATGATCATAATGTTGATATGCATACTGGCAGTACTTTCAACCATCGTTATGTCAAATCAAATCCACAAGAGGTTGAAAATGCCACATGGATGCTGACGGTTTTCAGCTGCTTTGGGCAATACTTCTGTCTGCATTTTGAAGCATTTCAGCTTGGAATGGCTCCTGTCTACATAGCTTTTTTGCGTTTCATGGGTGATGATCATGAGGCAAAGAACTACAGCTACAGTCTGGAGGTTGGGGGAAATGGAAGAAAGATGATTTGGCAAGGAGTTCCAAGGAGTATTAGGGACAGTCATCGTAAAGTTCGAGACAGTTTTGATGGTCTCATCATCCAACGCAATATGGCTCTCTTTTTTTCAGGTGGTGACCGGAAGGAATTAAAGCTTAGGGTGACGGGAAGAATTTGGAAAGAACAG 921 44.19 MASGTGIPYFEDVRSKPEVVDPPQNEDMMDVGENVNDPAHSGSKPNLTVSSSVRDLLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYEGFGCLGIYPYYSKLKHESQCVYRPYNCPYAGSECIVLGDIPYLVSHLKDDHNVDMHTGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDHEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19385499 19387575 - Bpe024598 Bpe15g00979 116658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g00979 307 MobiDBLite consensus disorder prediction 1 47 - -
Bpe15g00979 307 CDD Sina 173 301 - -
Bpe15g00979 307 SUPERFAMILY RING/U-box 51 99 - -
Bpe15g00979 307 CDD RING-HC_SIAHs 57 95 - -
Bpe15g00979 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 15 307 - -
Bpe15g00979 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 167 IPR013083 -
Bpe15g00979 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Bpe15g00979 307 SUPERFAMILY TRAF domain-like 112 304 - -
Bpe15g00979 307 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 15 307 - -
Bpe15g00979 307 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Bpe15g00979 307 Pfam Seven in absentia protein family 101 300 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bpe15g00979 307 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270
Bpe15g00979 307 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 300 IPR008974 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g01960 Bpe15g00979 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01243 Bpe-Chr8:13946624 Bpe15g00979 Bpe-Chr15:19385499 9.82E-149 dispersed
Bpe13g00984 Bpe-Chr13:15613363 Bpe15g00979 Bpe-Chr15:19385499 3.07E-165 dispersed
Bpe14g00945 Bpe-Chr14:7028123 Bpe15g00979 Bpe-Chr15:19385499 5.65E-165 dispersed
Bpe15g00979 Bpe-Chr15:19385499 Bpe04g01960 Bpe-Chr4:24474177 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g00979 K04506 - qsu:112009971 607.06