Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01045 ATGGTGTTTCTTACTCTCTGCATTCGCTTGATATGCCTTTTGAGCTTGATTTTTCCAATTTCTATGGCGGCCCCAGGGAATCTTACTCTTCTTCATCAGCACCCGTACCCTGATGCTGTTTCTGAAGTGGTTCATCAGAGAGTAAAACATTCTGTATCCAGAAGAGAAATGCGGAGTCTCCAATCCAAGAACCAAGCCACTTGTCTCACAGGAAACCCAATCGACGACTGTTGGCGGTGCGACCAAAACTGGCAAGCTAACCGGCAAAGGCTCGCCGACTGCGGCCTTGGGTTCGGCCAAGACGCAATGGGAGGAAAAGGCGGCCAGATCTACACCGTCACCGACTCCTCCGATTTAAATCCGGCGAACCCAACTCCAGGAACTCTCCGGTACGCCGTCATCCAAGAAGAACCCCTATGGATCATCTTCGCTGGCGACATGACAATAAACCTAAAACACGAGCTTATCTTCAACAGCTTCAAAACCATCGACGGCCGGGGCGCCTCCGTCCACGTTACAGGCGGGGGCTGCATAACCCTTCAGTACGTATCAAACGTAATAATCCACAACATCAACGTCCACAATTGTAGGCCGACGGGGAATACAAACATACGGTCGAGCCCAACCCACGTAGGGTTCCGTGGCAAGTCAGACGGCGATGGTATTTCCATCTTCGGCGCCAACAAAATCTGGATCGACCATTGCTCGCTCTCATACTGTACAGACGGCTTGATCGACGCAATAATGGGGTCCACTGGGATAACTATTTCGAATAACTATTTTTCGCATCATGACGAGGTGATGCTATTGGGAGCCGACGATGGGTATTCGCCGGACTCCGGGATGCAGGTGACCATAGCTTTTAACCACTTCGGTGTGGCGCTGGTGCAGCGTATGCCTCGGTGTAGACTAGGGTATATACACGTGGTGAATAATGATTTTACGCAGTGGGAGATGTATGCTATCGGCGGTAGTGCTAACCCCACCATAAACAGCCAGGGGAACAGATACACTGCTCCGGCAAACACTAATGCCAAAGAGGTGACGAGGCGTTTGGATACAGGTGAGGTGGAGTGGACGGACTGGAACTGGAGAACCGTGGGGGACATCATGGTAAACGGAGCATTTTTTGTGCCGTCGGGCGAGGGTCTTAGCACTCAGTACAGTAAAGCTTCCAGTGTGGATCCAAAATCAGTCGGCCTGATTGATCAGCTCACCATCAACGCCGGTGTCTTTGGTGGCCTCAGAGATAATAGTAGGAGCAGTGCCTCGACAAGCAACGGAGGGTCGACGGGGGAAGGGGACCTTTACGGAATGATCTTTGGGGGCGCTAACAACGCTGCAGTGGATGCTCCTGCATCTTGGATTAGCTCTCTCTTTCAGTGTCTCCTAATTCTCTTAACTTTGAATTTTGCCACTCTCATTCCCAAGTTGGGTTGTAGGAATTAA 1449 51.07 MVFLTLCIRLICLLSLIFPISMAAPGNLTLLHQHPYPDAVSEVVHQRVKHSVSRREMRSLQSKNQATCLTGNPIDDCWRCDQNWQANRQRLADCGLGFGQDAMGGKGGQIYTVTDSSDLNPANPTPGTLRYAVIQEEPLWIIFAGDMTINLKHELIFNSFKTIDGRGASVHVTGGGCITLQYVSNVIIHNINVHNCRPTGNTNIRSSPTHVGFRGKSDGDGISIFGANKIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGADDGYSPDSGMQVTIAFNHFGVALVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPANTNAKEVTRRLDTGEVEWTDWNWRTVGDIMVNGAFFVPSGEGLSTQYSKASSVDPKSVGLIDQLTINAGVFGGLRDNSRSSASTSNGGSTGEGDLYGMIFGGANNAAVDAPASWISSLFQCLLILLTLNFATLIPKLGCRN 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19798888 19801428 + Bpe001956.1 Bpe15g01045 116724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01045 482 Pfam Pectate lyase 154 335 IPR002022 -
Bpe15g01045 482 SMART amb_all 146 343 IPR002022 -
Bpe15g01045 482 SUPERFAMILY Pectin lyase-like 60 389 IPR011050 -
Bpe15g01045 482 PANTHER PECTATE LYASE 6 429 - -
Bpe15g01045 482 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Bpe15g01045 482 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Bpe15g01045 482 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Bpe15g01045 482 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Bpe15g01045 482 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
Bpe15g01045 482 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Bpe15g01045 482 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Bpe15g01045 482 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Bpe15g01045 482 PANTHER PECTATE LYASE 18-RELATED 6 429 IPR045032 GO:0030570
Bpe15g01045 482 Gene3D - 71 413 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00306 Bpe-Chr8:1832348 Bpe15g01045 Bpe-Chr15:19798888 1.12E-177 dispersed
Bpe15g00661 Bpe-Chr15:17324303 Bpe15g01045 Bpe-Chr15:19798888 0 dispersed
Bpe15g01045 Bpe-Chr15:19798888 Bpe15g01343 Bpe-Chr15:21538423 0 wgd
Bpe15g01045 Bpe-Chr15:19798888 Bpe04g00676 Bpe-Chr4:4287461 0 wgd
Bpe15g01045 Bpe-Chr15:19798888 Bpe04g01900 Bpe-Chr4:23991902 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01045 K01728 - zju:107413230 682.945