Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01076 ATGGCGGAGGCTCCGACGAGTCCAGCTCGTGGGAGCCACGAGAATGGCGGCGAGCAGAGTTCGAGAACCGGAGTGCGAGAGCAAGACCGATATCTTCCTATCGCTAACATTAGCAGGATCATGAAGAAGGCGTTGCCTGCCAACGGCAAAATTGCCAAAGATGCCAAGGATACAGCATATTTGCAATGTGCAATTCTTTGTGTAGGTTTCCGAAATTCAATTACTCCTCGATGTTTTTATTTTGCTGTTTTTTTTTTTTTTACTTGCGAATGTCAATCGTTTAGGGCCAGCGATAAATGCCAGAAAGAGAAGAGGAAGACAATCAATGGTGACGATTTGTTGTGGGCAATGGCAACGTTAGGATTTGAGGACTGTATCGATGCGCTTAAGGTGTATCTAAATAGGTATAGAGAGGGTGATGCTAAAGGGTTTGCCAGAGGTGGTGATGACTCTTCTAAACGAGATGCAGTTGGCGTCCTCCCAAACACACAGGTTTAG 498 45.98 MAEAPTSPARGSHENGGEQSSRTGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTAYLQCAILCVGFRNSITPRCFYFAVFFFFTCECQSFRASDKCQKEKRKTINGDDLLWAMATLGFEDCIDALKVYLNRYREGDAKGFARGGDDSSKRDAVGVLPNTQV 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19984528 19985739 - Bpe001987.1 Bpe15g01076 116755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01076 165 PRINTS CCAAT-binding transcription factor subunit A signature 119 137 - -
Bpe15g01076 165 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Bpe15g01076 165 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 64 - -
Bpe15g01076 165 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 64 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bpe15g01076 165 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 95 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bpe15g01076 165 MobiDBLite consensus disorder prediction 1 25 - -
Bpe15g01076 165 Gene3D Histone, subunit A 18 157 IPR009072 GO:0046982
Bpe15g01076 165 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 95 164 - -
Bpe15g01076 165 SUPERFAMILY Histone-fold 28 142 IPR009072 GO:0046982
Bpe15g01076 165 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 59 IPR003958 -
Bpe15g01076 165 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 95 117 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01076 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - pop:7489621 204.912
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g01683 Bpe15g01076 CCT
Bpe04g01683 Bpe15g01076 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g01076 Bpe-Chr15:19984528 Bpe07g00646 Bpe-Chr7:13218659 3.67E-38 dispersed
Bpe15g01076 Bpe-Chr15:19984528 Bpe04g01683 Bpe-Chr4:22804541 3.49E-64 wgd
Bpe15g01076 Bpe-Chr15:19984528 Bpe04g00707 Bpe-Chr4:4554977 1.00E-50 wgd
Bpe15g01076 Bpe-Chr15:19984528 Bpe04g01866 Bpe-Chr4:23814893 1.14E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g452 . . . Bda15g00184 Bpe04g01683 Bpe15g01076 . Bma08g01142 . . . . Car04g01334 . . . . . . . . . . . . . . . . . . Cone1ag1336 Cone5ag0323 . . . . . . Blo13g00735 . Bda14g00336 Bda15g00376 Bpe04g01683 . . Bma08g00961 Sed07g2409 . . . . . . . . Bhi07g01026 Tan04g0390 Cmetu10g1537 . Hepe01g0881 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe03g00757 . 1 90 CCAAT-HAP3 Transcription Factor Family AT5G47670 90.0 1.1e-42 170.2
Bpe14g00737 . 12 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 65.4 5.3e-37 151.4
Bpe07g00646 . 21 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.8 6.9e-37 151.0
Bpe03g00757 . 1 144 CCAAT-HAP3 Transcription Factor Family AT1G21970 63.3 1.3e-43 173.3
Bpe09g00129 CCT 16 153 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.3 3.2e-37 152.1
Bpe07g00646 . 1 169 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.6 1.3e-58 222.6
Bpe14g00737 . 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.7 1.7e-55 212.2
Bpe09g00129 CCT 1 158 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.2 1.6e-53 205.7
Bpe11g00587 CCT 1 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 66.7 2.9e-50 194.9
Bpe04g01683 BCT,CCT 11 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.2 1.1e-44 176.4
Bpe04g01866 . 11 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.5 9.0e-44 173.3
Bpe15g00441 . 21 116 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.5 3.4e-43 171.4
Bpe04g00707 . 22 114 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 4.4e-43 171.0
Bpe04g00696 . 22 114 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 4.4e-43 171.0
Bpe04g01866 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.8 1.2e-50 196.1
Bpe04g00707 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.6 5.2e-49 190.7
Bpe04g00696 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.6 5.2e-49 190.7
Bpe04g01683 BCT,CCT 1 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 2.0e-48 188.7
Bpe07g00646 . 1 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.1 9.4e-43 169.9
Bpe14g00737 . 21 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.5 1.6e-42 169.1
Bpe09g00129 CCT 19 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 3.6e-42 167.9
Bpe11g00587 CCT 23 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 4.7e-42 167.5
Bpe15g00441 . 9 125 CCAAT-HAP3 Transcription Factor Family AT2G38880 68.3 8.8e-41 163.3
Bpe11g00587 CCT 21 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.1e-39 157.5
Bpe09g00129 CCT 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 2.5e-38 155.2
Bpe07g00646 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 5.6e-38 154.1
Bpe14g00737 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 5.6e-38 154.1
Bpe06g00510 . 68 164 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.3 1.6e-37 152.5
Bpe04g01683 BCT,CCT 25 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 70.8 8.1e-37 150.2
Bpe15g00441 . 22 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.7 8.1e-37 150.2
Bpe04g01683 BCT,CCT 7 157 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.3 1.4e-58 222.6
Bpe04g01866 . 1 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.4 1.2e-54 209.5
Bpe04g00696 . 1 139 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.8 7.8e-54 206.8
Bpe04g00707 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G37060 83.2 8.4e-48 186.8
Bpe07g00646 . 6 134 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.5 1.0e-45 179.9
Bpe11g00587 CCT 1 126 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.5 1.0e-45 179.9
Bpe14g00737 . 6 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 5.1e-45 177.6
Bpe09g00129 CCT 17 144 CCAAT-HAP3 Transcription Factor Family AT2G37060 65.5 1.3e-43 172.9
Bpe15g00441 . 22 114 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.5 9.3e-39 156.8
Bpe15g01076 BCT,CCT 11 155 CCAAT-HAP3 Transcription Factor Family AT2G37060 59.5 2.7e-38 155.2
Bpe07g00646 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 9.8e-46 180.3
Bpe14g00737 . 21 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.4 4.8e-45 177.9
Bpe15g00441 . 3 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.3 1.8e-44 176.0
Bpe11g00587 CCT 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.1 1.2e-43 173.3
Bpe09g00129 CCT 21 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 1.3e-42 169.9
Bpe04g01683 BCT,CCT 26 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.8 4.2e-41 164.9
Bpe04g00696 . 24 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.1 1.6e-40 162.9
Bpe04g00707 . 24 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.1 3.6e-40 161.8
Bpe04g01866 . 26 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.0 1.4e-39 159.8
Bpe04g01195 . 1 87 CCAAT-HAP3 Transcription Factor Family AT2G13570 86.2 2.6e-38 155.6
Bpe07g00646 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.0 6.8e-51 197.2
Bpe09g00129 CCT 19 125 CCAAT-HAP3 Transcription Factor Family AT5G47640 86.9 5.8e-50 194.1
Bpe14g00737 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 1.7e-49 192.6
Bpe11g00587 CCT 1 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.7 4.1e-48 188.0
Bpe04g01683 BCT,CCT 26 138 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.5 5.6e-45 177.6
Bpe04g01866 . 26 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.9 1.8e-43 172.6
Bpe04g00696 . 19 123 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.2 8.9e-43 170.2
Bpe04g00707 . 19 114 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.3 5.8e-42 167.5
Bpe15g00441 . 17 116 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.0 1.3e-41 166.4
Bpe04g01683 BCT,CCT 12 151 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.9 2.2e-56 215.3
Bpe04g01866 . 1 136 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.5 2.7e-54 208.4
Bpe04g00696 . 16 131 CCAAT-HAP3 Transcription Factor Family AT3G53340 86.7 1.0e-53 206.5
Bpe04g00707 . 16 114 CCAAT-HAP3 Transcription Factor Family AT3G53340 88.1 1.2e-46 183.0
Bpe07g00646 . 6 138 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.2 1.8e-45 179.1
Bpe14g00737 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.3 8.8e-45 176.8
Bpe11g00587 CCT 7 135 CCAAT-HAP3 Transcription Factor Family AT3G53340 66.7 2.6e-44 175.3
Bpe09g00129 CCT 17 151 CCAAT-HAP3 Transcription Factor Family AT3G53340 58.3 2.4e-42 168.7
Bpe15g00441 . 22 114 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.5 5.6e-39 157.5
Bpe15g01076 BCT,CCT 1 155 CCAAT-HAP3 Transcription Factor Family AT3G53340 58.5 7.3e-39 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g01076 Bpe_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0