Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01078 ATGTTGGATCTTAACTTTGGTGTTACTGTTTCTCGTAGTGATTCCATGGAGGTCGAAGATTTCCCAGCTAATTCAGTCACTCAAATGGAAGATTCTGGCACTTCAAATTCCTCCATTGTTAACGCTGAAGAAGCTCTAGCTCCAAGTTATAGTGGAAAAGACGAAGATTCTTCAAACAATTCGTCCGGATTCATTTTCGGCATCATGAGAAAACAGATGGAAAGCGATGGAACGAATTGGTTCGATGATGCAAACCCATCACCTGAACTACTCACCCAGCCTCTTTTTCCGGTCGCCGCAAACGGGAAAGACTGGGATTTGGAGCTTCGGTTGGGATTAGCTGCCTCGGCGACGCCTCAGTGGTTGAACTTGTCGTTTCCCGACTCCGGTGGTGGTCAAACGGAGATCAAAAGTTTTCAGCAAAAGCAACAGCTAGTAAGGAAAAGCCGGCGAGGTCCGCGATCTCGGAGCTCTCAGTACCGTGGCGTCACGTTTTACAGGCGAACGGGCCGGTGGGAATCGCATATCTGGGATTGTGGGAAACAAGTATATCTGGGTGGATTTGACACTGCTCATGCTGCAGCTAGAGCATATGATAGAGCTGCCATCAAATTCCGAGGAATTGATGCTGATATCAACTTCAACACCAGCGATTACGAAGAAGATATAAAACAGACTAAGAACTTGACCAAGGAGGAATTTGTGTACATTCTTCGTCGGCATAGTAGCGGGTTTTCTCGAGGGAGCTCGAAATTTCAAGGTGCTATGTTTCGAAAGTGTGGGCAATGGGAGGCCAGGGTCGAGCCGATGCTCGGAAAGAAGTAA 825 47.39 MLDLNFGVTVSRSDSMEVEDFPANSVTQMEDSGTSNSSIVNAEEALAPSYSGKDEDSSNNSSGFIFGIMRKQMESDGTNWFDDANPSPELLTQPLFPVAANGKDWDLELRLGLAASATPQWLNLSFPDSGGGQTEIKSFQQKQQLVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNTSDYEEDIKQTKNLTKEEFVYILRRHSSGFSRGSSKFQGAMFRKCGQWEARVEPMLGKK 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 19991257 19992444 - Bpe001989.1 Bpe15g01078 116757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01078 274 Pfam AP2 domain 159 207 IPR001471 GO:0003700|GO:0006355
Bpe15g01078 274 SMART rav1_2 159 221 IPR001471 GO:0003700|GO:0006355
Bpe15g01078 274 SUPERFAMILY DNA-binding domain 158 216 IPR016177 GO:0003677
Bpe15g01078 274 ProSiteProfiles AP2/ERF domain profile. 159 215 IPR001471 GO:0003700|GO:0006355
Bpe15g01078 274 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 274 - -
Bpe15g01078 274 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 274 - -
Bpe15g01078 274 Gene3D AP2/ERF domain 158 217 IPR036955 GO:0003700|GO:0006355
Bpe15g01078 274 CDD AP2 159 217 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g01078 Bpe-Chr15:19991257 Bpe11g00910 Bpe-Chr11:6744803 7.69E-11 dispersed
Bpe01g00162 Bpe-Chr1:959651 Bpe15g01078 Bpe-Chr15:19991257 1.46E-53 wgd
Bpe15g01078 Bpe-Chr15:19991257 Bpe08g00135 Bpe-Chr8:709353 6.10E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22653 PF00847 AP2 1.70E-10 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01078 K09284 - jre:108997119 306.605