Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01101 TCTTTCCAGCACAAAACCTTTTGGATGCCAAGTAATGCTGGGTGCTTAACTGATGGGGAGATGGGGTATGATAATTCTTCCAGAATGGAAGCAAAGCGTGGCCATCAATGGTACACAGATGGCAGTACACCAAAATTATTTAGCAGCAAGAAGCAGGCAATAGAAACAGTTAGCGGTAGACCAGTTCCGGGGGTTTCACATATGGATGTTTCTCTATGGGACAACTCTTCTGGTTTTCAGTCTGCTCCTGGGCAGTTCAGTGATCGCCTCTTTGGATCTGAACCTATTCGAACTGTCAATTTGGTCGATAGAAATATCTCTGACGTTGGACCTGCGGATATGCACGCAGGAAGAAAAGATTTGGAGAATGAATATGGTAATGATTCCTCTATAGGCTTATCCATGTGCCATGCTATGGAAGATCCCATATCATGTCAAAATTTTGGTGGAGTTAGAAAAGTCAAAGTAAATCAGGTAAGGGATTCCGATAATGCCATGGCTGCACCCATAAGACACTCATTCAGCAGAGAAAATAGCAGCACAATTACAATGGGCACCATATATGGTACAAATGATGAAAACATTATGTTGTTGGGCCAGAATTACTCCAATAAGAACGAGAACAACATTTCGATGGGGTCTGGTTTCAGTAAGACAGATGATAATTTCATTTCAATTGGTCATAGCTTCAATAAGGATGATGTTAATTTTATTTCTATGGGTCACAACTGCAGCAACAGCGATACAAGTATTTTATCAATTAGTCAGCCCTTTGACAAAGTTGATGGAACTTTTATATCAATGGGTCAGTCATATGAGAAAACTAATAATGGAAGTGTCATTTCACTGCAAACCTCTTACAACAAGGGGCCTGGAAACTTCATCTCGATGAGACCAACTTATTGTAAAGCAAATGAAAATTTCATTTCAATGGCTTCCTCCTACAGTAAGAGTACAAGGGAGGCTTTATCATTTACAACAACCTATGATAAAGTTGATCCTGAAATTGTAAATTTGGATCCTAACTATGACAGAGGAGACTCTGGGATGCTAGATATGGGCCACAACTATAACAGTGGCAAGGGCACTACCATATCTTTTGGAGGGTTTGACGAAGAACCCAAGACAAATAATCCCTCTGGTGGGATCATCAGCAGCTATGATTTGTTGATGGGCACTCAAAATTCTTCTCGTATTTCAGAGGTACCCATCCAGAAAGATTTTGTGGATTCAAATGCTGGAAGTGTCAACAATGTTTTGAAAGTTAATAATCATAAAATGGACAACACTGAAAAAAGTAGAGAGCCAAAGACAACTAAGAAGGTTTCCCCAAATAATTTTCCTTCAAATGTCAAAAGTTTGTTGTCTACTGGTATGCTTGATGGTGTTCCCGTGAAATATGTTTCTTGGTCAGGAGAGAAAAACCTCAAAGGAATTATAAAAGGAACTGGCTATTTGTGCAACTGTGATAAGTGTCAGCAATCTAAGGCTCTCAATGCTTATGAATTTGAGCGTCATGCTGGTTGCAAGACCAAACATCCCAATAATCACATTTATTTTGAGAATGGAAAGACCATCTACACCATCGTTCAAGAGTTAAAGAGCACACCACAGGAGATGCTATTTGATGCCATTCAGAATGTGACAGGGTCACCTATTAATCAGAAAAACTTCCGTATTTGGAAAGCTTCATATCAAGCTGCCACCCGCGAACTTCAGCGTATTTACGGGACAGACGAAGGAATTATGCCATCTTGA 1758 39.87 SFQHKTFWMPSNAGCLTDGEMGYDNSSRMEAKRGHQWYTDGSTPKLFSSKKQAIETVSGRPVPGVSHMDVSLWDNSSGFQSAPGQFSDRLFGSEPIRTVNLVDRNISDVGPADMHAGRKDLENEYGNDSSIGLSMCHAMEDPISCQNFGGVRKVKVNQVRDSDNAMAAPIRHSFSRENSSTITMGTIYGTNDENIMLLGQNYSNKNENNISMGSGFSKTDDNFISIGHSFNKDDVNFISMGHNCSNSDTSILSISQPFDKVDGTFISMGQSYEKTNNGSVISLQTSYNKGPGNFISMRPTYCKANENFISMASSYSKSTREALSFTTTYDKVDPEIVNLDPNYDRGDSGMLDMGHNYNSGKGTTISFGGFDEEPKTNNPSGGIISSYDLLMGTQNSSRISEVPIQKDFVDSNAGSVNNVLKVNNHKMDNTEKSREPKTTKKVSPNNFPSNVKSLLSTGMLDGVPVKYVSWSGEKNLKGIIKGTGYLCNCDKCQQSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYTIVQELKSTPQEMLFDAIQNVTGSPINQKNFRIWKASYQAATRELQRIYGTDEGIMPS 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 20165464 20167625 + Bpe002013.1 Bpe15g01101 116780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01101 585 MobiDBLite consensus disorder prediction 425 448 - -
Bpe15g01101 585 Pfam Tify domain binding domain 478 533 IPR032308 -
Bpe15g01101 585 PANTHER N-LYSINE METHYLTRANSFERASE 3 585 - -
Bpe15g01101 585 MobiDBLite consensus disorder prediction 425 439 - -
Bpe15g01101 585 PANTHER AUTOIMMUNE REGULATOR 3 585 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01101 - - - csv:101206313 801.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g01101 Bpe-Chr15:20165464 Bpe01g00222 Bpe-Chr1:1349646 8.21E-20 dispersed
Bpe11g00777 Bpe-Chr11:5803817 Bpe15g01101 Bpe-Chr15:20165464 1.29E-26 wgd
Bpe15g01101 Bpe-Chr15:20165464 Bpe04g01608 Bpe-Chr4:22254873 2.58E-41 wgd
Bpe15g01101 Bpe-Chr15:20165464 Bpe04g01846 Bpe-Chr4:23696497 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01608 . 45 849 PHD Transcription Factor Family AT3G53680 54.4 2.0e-248 855.5
Bpe15g01101 . 437 566 PHD Transcription Factor Family AT3G53680 54.6 2.6e-38 157.5
Bpe11g00777 . 306 445 PHD Transcription Factor Family AT3G53680 51.8 7.7e-38 156.0
Bpe04g01846 . 425 554 PHD Transcription Factor Family AT3G53680 53.1 3.2e-36 150.6
Bpe10g00969 . 10 625 PHD Transcription Factor Family AT5G22260 50.3 4.1e-175 611.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g01101 Bpe_Chr15 FPKM 2.063058 1.889246 2.019469 1.961523 2.639907 2.212707 3.233642 2.115469 2.179221 2.112815