Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01111 ATGGTTTTCTCATCAATACCAGCCTATTTGGATCCACCAAACTGGCAACAGCAAACAAATCAGCAATCTGGAGTTGGCTGTGAAAACACTCCGCCGCCACCTTTACCTGTTACTGGAGGTGGATCCGGTTCGATCAGGCAGAGTTCGATGGCTGATCGTGCCCGTCTAGCCAAGATGCCACAGCCGGAGGCTGCCCTAAAGTGCCCAAGATGCGAATCCACAAACACGAAGTTTTGTTACTACAATAATTACAACTCTTCTCAACCTCGCCATTTTTGCAAGAGCTGCAGGCGATACTGGACGAGAGGTGGTGCCCTGAGGAACGTCCCGGTTGGGGGTGGTAGCAGAAGGAACAAAAGAAGTAAAGCCGGAAATGGATCGAAATCTCCGTTGATGGAGAAGAAAACTGCGTCAAGCTCTACTGCTACAGTCTCTTCAAGTAGCTGCACTTCTGATATGGTTGGCCATTGGATCTCGCCAGAATCTTCGCAGCTGCAACTTTTTCCATTTCATCATTTGAGTGATTATAGTATCGGGAATGTCGGCATGAGTTTCTCCGGAATCCAACCGCCTACTGTTGGCGAAGATAGTGTTAGATTTCCGATCGCTATTGATTCAAGTGGTTGCGCCGGCGGCAGTGACGATCCCATGTTTTCCTGTGCAATTAATGAAAATTGGAGATTACAACAAGTTCAACAATTTCCTTTTCTATCAAATATGGAAAATTCAAATGGGCTATATACGTTGGGGTGTTATAATGAAGGCGGCGCAGAGCGACCCAATTATCAGCTTCATCGCTTTTCGAAGCCCTTAGCTTCTGGGGTTTCTCGTTTGGTTACAGAGAAAATGGAGGAAAATCAAGGGTTTAATCTTCCGAGAAACTTTCTGGGTGTTCAAGGAAATGATCAATTCTGGAGAGGAAACAATGCCTGGAATGACCTTTCTGGTTTCAGTTCATCATCCACCAGCCATCTCTAA 978 46.11 MVFSSIPAYLDPPNWQQQTNQQSGVGCENTPPPPLPVTGGGSGSIRQSSMADRARLAKMPQPEAALKCPRCESTNTKFCYYNNYNSSQPRHFCKSCRRYWTRGGALRNVPVGGGSRRNKRSKAGNGSKSPLMEKKTASSSTATVSSSSCTSDMVGHWISPESSQLQLFPFHHLSDYSIGNVGMSFSGIQPPTVGEDSVRFPIAIDSSGCAGGSDDPMFSCAINENWRLQQVQQFPFLSNMENSNGLYTLGCYNEGGAERPNYQLHRFSKPLASGVSRLVTEKMEENQGFNLPRNFLGVQGNDQFWRGNNAWNDLSGFSSSSTSHL 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 20233028 20234130 + Bpe002022.1 Bpe15g01111 116790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01111 325 MobiDBLite consensus disorder prediction 11 50 - -
Bpe15g01111 325 MobiDBLite consensus disorder prediction 107 148 - -
Bpe15g01111 325 ProSitePatterns Zinc finger Dof-type signature. 68 104 IPR003851 GO:0003677|GO:0006355
Bpe15g01111 325 Pfam Dof domain, zinc finger 65 120 IPR003851 GO:0003677|GO:0006355
Bpe15g01111 325 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 322 IPR045174 GO:0003700|GO:0006355
Bpe15g01111 325 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 4 322 - -
Bpe15g01111 325 ProSiteProfiles Zinc finger Dof-type profile. 66 120 IPR003851 GO:0003677|GO:0006355
Bpe15g01111 325 MobiDBLite consensus disorder prediction 131 148 - -
Bpe15g01111 325 MobiDBLite consensus disorder prediction 11 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01111 - - - vvi:100258172 352.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01330 Bpe-Chr4:19894303 Bpe15g01111 Bpe-Chr15:20233028 1.51E-87 dispersed
Bpe15g01111 Bpe-Chr15:20233028 Bpe10g00044 Bpe-Chr10:647821 5.58E-31 dispersed
Bpe15g01111 Bpe-Chr15:20233028 Bpe02g00845 Bpe-Chr2:6257405 5.19E-60 wgd
Bpe15g01111 Bpe-Chr15:20233028 Bpe03g01040 Bpe-Chr3:29734000 4.21E-73 wgd
Bpe15g01111 Bpe-Chr15:20233028 Bpe08g01366 Bpe-Chr8:14735050 7.94E-66 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g01139 . 145 297 C2C2-Dof Transcription Factor Family AT1G29160 56.9 7.2e-47 183.7
Bpe02g01093 . 12 163 C2C2-Dof Transcription Factor Family AT1G29160 52.0 2.9e-40 161.8
Bpe08g00765 . 8 139 C2C2-Dof Transcription Factor Family AT1G29160 53.9 1.6e-38 156.0
Bpe08g00766 CCT 7 139 C2C2-Dof Transcription Factor Family AT1G29160 51.8 3.0e-37 151.8
Bpe11g01139 . 145 297 C2C2-Dof Transcription Factor Family AT2G34140 53.5 8.5e-45 176.8
Bpe02g01093 . 12 163 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.8e-39 159.1
Bpe08g00765 . 8 103 C2C2-Dof Transcription Factor Family AT2G34140 66.7 3.8e-37 151.4
Bpe04g01330 BCT,CCT,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 66.0 2.0e-42 169.9
Bpe02g00845 CCT,ECH 1 131 C2C2-Dof Transcription Factor Family AT2G37590 61.7 1.4e-38 157.1
Bpe08g01366 . 1 119 C2C2-Dof Transcription Factor Family AT2G37590 54.2 1.3e-36 150.6
Bpe12g00543 . 97 408 C2C2-Dof Transcription Factor Family AT3G47500 51.1 1.8e-73 273.5
Bpe02g00845 CCT,ECH 1 131 C2C2-Dof Transcription Factor Family AT5G02460 59.9 2.8e-38 156.4
Bpe15g01111 . 1 118 C2C2-Dof Transcription Factor Family AT5G02460 54.4 1.2e-36 151.0
Bpe02g00845 CCT,ECH 54 140 C2C2-Dof Transcription Factor Family AT3G55370 79.3 1.7e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22654 PF02701 zf-Dof 9.10E-33 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g01111 Bpe_Chr15 FPKM 84.09079 93.135529 201.035782 201.731705 252.482666 266.581573 236.390671 169.94696 179.448425 165.046722