Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01136 ATGGAAGCCATACCCCAATCCCACGTCATTCAGGTGGAAGAAGGGTCCCCTCAGAGATCTGTCATCGTCTCCGGCACCGGTGACGTTTCAGGTAATATGGAACGCAGGCGTTCGAGGGAGATCGAGATTGAGATTGTTGGAGGGGTGCTGAACAAGGGGAGGGGATCTTCTGCGTCTGAGTGTTCAGTGGAGGTGGATCCAGATCCCGATCGGCCTGTGCCGGAGACCAGGTTACATTTCGGAAAAGTGGAGAGGGATTGTAGGATTTGCCATCTGAGTTTAAATGCAAGCAACCCTGAATCTGGAATTCCAATGGAATTGGGGTGCTCTTGCAAGAATGATTTAGCTGCTGCCCACAAACACTGTGCGGAGGCTTGGTTCAAAATCAAGGGTAACAAAATCTGTGAAATCTGTGGTTCGATTGCCAGGAATGTGTCGGATGCTAATGCACCAGACTTGACACTGCATGAGAACGTTGCAAACGAAAATGCAACAATGGTGGCTGTTGCTCCTGCTGGACAGGTCCAGCGCTTCTGGTATGGCCATAGGTTCCTGAATATTCTCCTAGCCACCATGGTCTTCGCCTTCGTCATCTCCTGGCTCTTCCACTTCAACGTTCCCTCGTGA 627 50.88 MEAIPQSHVIQVEEGSPQRSVIVSGTGDVSGNMERRRSREIEIEIVGGVLNKGRGSSASECSVEVDPDPDRPVPETRLHFGKVERDCRICHLSLNASNPESGIPMELGCSCKNDLAAAHKHCAEAWFKIKGNKICEICGSIARNVSDANAPDLTLHENVANENATMVAVAPAGQVQRFWYGHRFLNILLATMVFAFVISWLFHFNVPS 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 20375473 20376552 - Bpe002047.1 Bpe15g01136 116815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01136 208 SUPERFAMILY RING/U-box 84 141 - -
Bpe15g01136 208 Pfam RING-variant domain 87 138 IPR011016 GO:0008270
Bpe15g01136 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 149 IPR013083 -
Bpe15g01136 208 PANTHER OS01G0850200 PROTEIN 34 208 - -
Bpe15g01136 208 ProSiteProfiles Zinc finger RING-CH-type profile. 79 145 IPR011016 GO:0008270
Bpe15g01136 208 PANTHER ZINC FINGER, RING-CH-TYPE 34 208 - -
Bpe15g01136 208 SMART ringv_2 86 139 IPR011016 GO:0008270
Bpe15g01136 208 MobiDBLite consensus disorder prediction 54 73 - -
Bpe15g01136 208 CDD RING_CH-C4HC3_MARCH 87 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01242 Bpe-Chr4:18140326 Bpe15g01136 Bpe-Chr15:20375473 2.51E-62 dispersed
Bpe07g00540 Bpe-Chr7:11734378 Bpe15g01136 Bpe-Chr15:20375473 9.94E-22 dispersed
Bpe10g00277 Bpe-Chr10:10116558 Bpe15g01136 Bpe-Chr15:20375473 7.17E-11 transposed
Bpe15g01136 Bpe-Chr15:20375473 Bpe03g01022 Bpe-Chr3:29632886 2.37E-63 wgd
Bpe15g01136 Bpe-Chr15:20375473 Bpe04g01820 Bpe-Chr4:23559370 2.42E-101 wgd
Bpe15g01136 Bpe-Chr15:20375473 Bpe08g01389 Bpe-Chr8:14847294 1.04E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01136 - - jre:108991946 230.335