Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01145 ATGGCGCCAAGCGAAAGCACAGTTTTGCAATTTACCCCTTCTTCGACCATCTTGTCGGCGAAGGTTCATCCTTTGGTTATTTTCAACATCTGTGACTGTTACGTTCGACGCCCTGACCCAGCTGAGCGGGTTATCGGAACTCTTCTTGGATCTGTTCTACCCGACGGTACCGTCGATATCCGAAATTCGTATGCCGTTCCTCACAACGAGTTCTCCGATCAGGTTGCCTTGGATATCGATTATCACCATAATATGTTAATTTCCCACCAAAAAGTGAACCCAAAGGAAGCCATTGTTGGATGGTACTCAACTGGCCTGGGAGTTACTGCTGGCAGTTCTTTGATTCATGATTTCTATTCGAGAGAAGTTTCCAACCCTATTCATTTGACTGTTGACACCGGCTTCAGGAATGGTGAGGGTACCATTAAAGCTTATGTCTCGGTCAAATTGTCTTTGGGAGACAGACAGCTTGCCGCCCAATTTCAAGAAATTCCTCTAGATCATCGAATGGTTGAAGCTGAGCGAGTTGGATATGATATTCTTAAGTCAACAATGGTGGAAAAACTACCCAATGATTTGGAAGGAATGGAAGCCTCAATGGAACGTCTACTATGTCTAATTGATGATATCTACAAATACGTGGACAAAGCTGTGGAAGGTCGTGATGCACCCGACAACAGCATAGGAAGATTTATAGCGGATACAGTTGCATCCCTGCCAAAAATGTCGCCATCATCTTTTGATAAACTAATGAATGATAACCTTCAGGATCATTTGGTGTTGCTATATTTGTCAAGTATCACCAGGACGCAGCTTAGCTTGGCTGAAAAGTTGAATACAGCAGCTCAGAACCTGTAA 858 43.82 MAPSESTVLQFTPSSTILSAKVHPLVIFNICDCYVRRPDPAERVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLISHQKVNPKEAIVGWYSTGLGVTAGSSLIHDFYSREVSNPIHLTVDTGFRNGEGTIKAYVSVKLSLGDRQLAAQFQEIPLDHRMVEAERVGYDILKSTMVEKLPNDLEGMEASMERLLCLIDDIYKYVDKAVEGRDAPDNSIGRFIADTVASLPKMSPSSFDKLMNDNLQDHLVLLYLSSITRTQLSLAEKLNTAAQNL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 20421066 20423302 - Bpe002056.1 Bpe15g01145 116824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01145 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bpe15g01145 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 17 120 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bpe15g01145 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 10 285 - -
Bpe15g01145 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bpe15g01145 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bpe15g01145 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Bpe15g01145 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 10 285 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bpe15g01145 285 Gene3D Cytidine Deaminase, domain 2 8 186 - -
Bpe15g01145 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01268 Bpe-Chr4:18596287 Bpe15g01145 Bpe-Chr15:20421066 6.07E-30 dispersed
Bpe08g01071 Bpe-Chr8:12866872 Bpe15g01145 Bpe-Chr15:20421066 4.45E-10 dispersed
Bpe09g00093 Bpe-Chr9:647096 Bpe15g01145 Bpe-Chr15:20421066 1.01E-08 dispersed
Bpe15g01145 Bpe-Chr15:20421066 Bpe03g01008 Bpe-Chr3:29559872 4.87E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01145 K03249 - csv:101205957 492.656