Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01161 ATGGAGCCACCTGAGAGTCGGTATCTCCGTACTGAACTGGTTCCGCTTCCTGACCACGCGATCCCCTCTTTCTGGTTTCTGCTGTTTGTTTCTTTTCATGGTGTTGTGGCTTCCATCTCTACCAGTCCTCGCACTGATGAAGATATTTTCAAGGATTACAGTGCTCGACATTCCGGCCTTGTTCGCGCTCTCACCTCCGGTAATCTCCCTCTCTTATTGCTTTTCAAATTCAGAAAAGAAAACTTGTGCCTGTATGGAGCTCGATTGAACCGCAATGAAAGCCGCCTGTTTAATCTGATCAACGACCTGCCTACTGTTTTTGAAGTTGTAACTGGAAGGAAGCCTTTAAAAGAAAAACTTAGTATGGATAGTGGAAGCAAATCCAGGAACACCACAAAGCAGAGATCAATTGATGGACAGGCAAGAGGCAGCAATTCTAAGATAATCGACAAAAATTTTAGGGACGATGAAGACGAGCACAGCGATACTCTCTGCGGAAGCTGCGGCTGTAATTATAACGGAGACGAGTTTTGGATCGGGTGCGACATCTGTGCGAGGTGGTTTCCTGGAAAATGTGTGAAGATAACAGCAACCAAGGCCGAAAGTATTAAACAGTGCAAATGTCCCTTGTGCAGCACAAAGAAGGGGGGATGGCCTTGGGGGTGCACCTGA 672 46.73 MEPPESRYLRTELVPLPDHAIPSFWFLLFVSFHGVVASISTSPRTDEDIFKDYSARHSGLVRALTSGNLPLLLLFKFRKENLCLYGARLNRNESRLFNLINDLPTVFEVVTGRKPLKEKLSMDSGSKSRNTTKQRSIDGQARGSNSKIIDKNFRDDEDEHSDTLCGSCGCNYNGDEFWIGCDICARWFPGKCVKITATKAESIKQCKCPLCSTKKGGWPWGCT 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 20480741 20483010 + Bpe002072.1 Bpe15g01161 116840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01161 223 CDD PHD_AL_plant 164 214 IPR044104 -
Bpe15g01161 223 PANTHER CPG BINDING PROTEIN 85 216 IPR045104 GO:0006355|GO:0042393
Bpe15g01161 223 PANTHER CPG BINDING PROTEIN 38 86 IPR045104 GO:0006355|GO:0042393
Bpe15g01161 223 MobiDBLite consensus disorder prediction 119 142 - -
Bpe15g01161 223 MobiDBLite consensus disorder prediction 125 142 - -
Bpe15g01161 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 213 IPR013083 -
Bpe15g01161 223 Pfam Alfin 47 87 IPR021998 GO:0006355|GO:0042393
Bpe15g01161 223 SUPERFAMILY FYVE/PHD zinc finger 153 217 IPR011011 -
Bpe15g01161 223 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 85 216 - -
Bpe15g01161 223 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 38 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g01161 Bpe-Chr15:20480741 Bpe13g01240 Bpe-Chr13:17643801 2.59E-30 dispersed
Bpe15g01161 Bpe-Chr15:20480741 Bpe04g01807 Bpe-Chr4:23499448 2.06E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01161 - - jre:109007164 204.142