Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01203 ATGGGAGCTTTGAGCAACGCTGGTTTCGCTTCAGCGTTCAAATCTCCTCTCGACAACGACTTCATCTTGAGGACAAAGAGCAAAGGCAGCCATGCTTCATCTTGCTTCATTGTTTCCAGCAACTTTTCCAGATTCAGCAGAATCTACAGCTCGATATCTGAGACTGGGAGTGAGATTCAGAAACCCCCCTCTAAGCCCACAACCTCGAACGGCAAGAACAGAATGGAAGAGTACAATATAGCGATGAAGAAGATGATGCGGAATCCGTACGAGTATCATCACGATCTGGGCATGAACTACACCCTCATAGCGGACAATCTGATAGTGGGATCTCAGCCTCAGAAACCCGAAGATATAGATCACTTGAAAAAAGAAGAGAAGGTGGCTTATATTCTCAATTTGCAGCAGGATAAGGACGTTGAGTATTGGGGAATCGACTTGCAAGAGATAATAAAAAGATGTCGAGATCTTGGTATTCGCCACATGAGGAGGCCTGCGAGAGATTTTGACCCTGATTCCCTGAGATGTGGATTGCCGAAAGCCGTTTCTTCGTTAGAATGGGCGATATCTGAAGGACAAGGAAAAGTTTATGTGCATTGCACTGCTGGACTTGGGAGGGCGCCTGCTGTTGCAATTGCTTATATGTTCTGGTTTTCTGGAATGAATCTTAATACAGCTTATGATACACTGACTTCAAAGAGACCTTGTGGACCCAACAAAAGAGCCATACGAGGCGCTACTTATGATCTCGCAAAGAACAATCCGTGGAAGGAGCCATTCGAGAATCTACCAGATTATGCATTCGAGGATGTTGCTGATTGGGAGAGAAACTTGATTCAAGAACAAGTTCGTACCCTCCGTGGCACCTGA 870 45.52 MGALSNAGFASAFKSPLDNDFILRTKSKGSHASSCFIVSSNFSRFSRIYSSISETGSEIQKPPSKPTTSNGKNRMEEYNIAMKKMMRNPYEYHHDLGMNYTLIADNLIVGSQPQKPEDIDHLKKEEKVAYILNLQQDKDVEYWGIDLQEIIKRCRDLGIRHMRRPARDFDPDSLRCGLPKAVSSLEWAISEGQGKVYVHCTAGLGRAPAVAIAYMFWFSGMNLNTAYDTLTSKRPCGPNKRAIRGATYDLAKNNPWKEPFENLPDYAFEDVADWERNLIQEQVRTLRGT 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 20746704 20748329 + Bpe002114.1 Bpe15g01203 116882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01203 289 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 176 235 IPR000387 GO:0016311|GO:0016791
Bpe15g01203 289 ProSiteProfiles Dual specificity protein phosphatase domain profile. 99 256 IPR020422 GO:0006470|GO:0008138
Bpe15g01203 289 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 96 241 IPR029021 -
Bpe15g01203 289 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 3 289 - -
Bpe15g01203 289 SMART dsp_5 99 249 IPR020422 GO:0006470|GO:0008138
Bpe15g01203 289 CDD DSP_laforin-like 98 245 IPR045204 GO:0019203|GO:0046838
Bpe15g01203 289 Pfam Dual specificity phosphatase, catalytic domain 120 239 IPR000340 GO:0008138|GO:0016311
Bpe15g01203 289 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 289 - -
Bpe15g01203 289 Gene3D Protein tyrosine phosphatase superfamily 82 289 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01203 - - - zju:107413978 448.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01910 Bpe-Chr4:24071260 Bpe15g01203 Bpe-Chr15:20746704 1.04E-10 dispersed
Bpe11g00633 Bpe-Chr11:4899074 Bpe15g01203 Bpe-Chr15:20746704 6.72E-06 dispersed
Bpe15g01203 Bpe-Chr15:20746704 Bpe15g01037 Bpe-Chr15:19749342 4.24E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g142 . . . . . Bpe15g01203 Bma03g00369 . . . . . Car04g00243 . . . . . . . . . . . . . . . . . . Cone1ag1626 Cone5ag0149 . . . . . . Blo13g00691 Blo04g00349 Bda14g00209 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe12g00460 . 73 934 Protein tyrosine phosphatase (PTP) family AT5G23720 61.5 7.8e-294 1006.5
Bpe04g01185 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.6 2.3e-42 168.7
Bpe15g00162 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 2.5e-71 265.0
Bpe15g01037 . 44 322 Protein tyrosine phosphatase (PTP) family AT3G52180 69.9 1.2e-115 412.9
Bpe15g01203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 1.8e-111 399.1
Bpe02g01492 . 137 541 Protein tyrosine phosphatase (PTP) family AT3G01510 69.3 2.2e-177 618.6
Bpe14g00621 CCT 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 55.9 1.2e-69 260.0
Bpe12g00275 BCT,CCT 3 228 Protein tyrosine phosphatase (PTP) family AT2G32960 56.4 3.7e-68 255.0
Bpe15g00169 BCT,CCT 34 189 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 1.1e-64 243.4
Bpe14g00022 . 17 164 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 3.5e-50 195.3
Bpe11g00633 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 57.1 3.7e-100 361.7
Bpe02g02223 . 6 273 Protein tyrosine phosphatase (PTP) family AT2G35680 53.9 5.2e-78 288.1
Bpe14g00621 CCT 47 211 Protein tyrosine phosphatase (PTP) family AT4G03960 73.3 6.0e-74 273.9
Bpe15g00169 BCT,CCT 22 189 Protein tyrosine phosphatase (PTP) family AT4G03960 68.5 2.4e-67 251.9
Bpe12g00275 BCT,CCT 39 228 Protein tyrosine phosphatase (PTP) family AT4G03960 59.4 6.6e-65 243.8
Bpe14g00022 . 13 168 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.4e-53 204.9
Bpe14g00022 . 4 203 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.5e-83 305.1
Bpe15g00169 BCT,CCT 28 189 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.8e-57 219.2
Bpe14g00621 CCT 34 205 Protein tyrosine phosphatase (PTP) family AT3G02800 59.3 2.6e-56 215.3
Bpe12g00275 BCT,CCT 58 220 Protein tyrosine phosphatase (PTP) family AT3G02800 61.3 8.3e-55 210.3
Bpe04g01698 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.7 2.7e-61 233.8
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe12g00294 . 32 605 Protein tyrosine phosphatase (PTP) family AT3G19420 68.8 1.4e-230 795.8
Bpe15g00128 . 34 620 Protein tyrosine phosphatase (PTP) family AT3G19420 65.5 4.1e-214 741.1
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe11g00849 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 56.1 1.6e-74 276.2
Bpe07g00217 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.7 1.2e-110 396.4
Bpe03g01015 . 1 662 Protein tyrosine phosphatase (PTP) family AT3G09100 69.7 4.1e-284 973.8
Bpe03g01015 . 5 662 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 7.6e-259 889.8
Bpe03g01015 . 87 669 Protein tyrosine phosphatase (PTP) family AT5G28210 57.5 7.6e-184 640.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012743 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g01203 Bpe_Chr15 FPKM 3.133375 3.290385 2.829239 2.591841 1.159817 1.139983 0.730505 29.896536 33.219742 28.849276