Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01214 ATGGATCCAGACGCCTTCACCGCCAGCTTATACAAGTGGGACCCTCGGGCTGCTGTTGGAGGACCATCCACCCGCTTACTGGACCAGGTGGCTACCCCACCCACCGGAGCTGCACCTGTCCCCACGACCTTCTCGGTCCGACCGAGGGATCTGGGTGGCCTTGAGGACTTGTTTCAGGCTTACGGCATTAGATACTACACGGCTGCCAAGATAGCGGAGCTTGGGTTCACTGTGAGCACTCTTTTGGACATGAAAGATGGGGAGCTGGACGAGATGATGAACAGCCTCTCGCAGATATTTCGGTGGGACCTCTTGGTGGGAGAAAGGTACGGCATTAAAGCAGCCGTAAGAGCCGAGCGAAGACGATTGGACGATGAAATGGAATCGCGGCGCCGCCACTTACTCTCCGCTGATACTGCTAATAACGCTCTTGATGCACTTTCTCAGGAAGGATTGTCGGAGGAGCATGTGCAGCAGGAGAAGGAGGTGGTGGGGAGTGGAGGAGGAACGAGAGAAGTAATTGTGGCTTCAGAGAGGAAGAAACAGCGGCATAGGAAGGGGCAGAGAAAAATGCTCGTGGATTTCGATAACGACGGAAACGAAGTGGGAGAAGAAGGCGACGACGATATTAATGGTGCAAATGGAATGAACGAGAGACAACGAGAACACCCGTTCATTGTAACAGAACCAGGAGAAGTTGCCAGAGGGAAGAAGAATGGCTTAGATTACCTTTTTCATCTCTACGAACAGTGCCGAGAATTTCTGATCCAGGTGCAGAATATAGCCAAGGACCACGGCGAGAAATGCCCCACCAAGGTGACAAATCAGGTGTTTAGATACGCGAAGAAAGCCGGAGCGAGCTACATCAACAAGCCCAAAATGCGACACTATGTGCATTGCTACGCCCTGCACTNNNNNNNNNNTTTACGTTTCCACTGTTCTCTCTGCGTTGATACTCTGCAAAAATGTCTAAAGCTCCGCGAAGAGTGA 990 51.41 MDPDAFTASLYKWDPRAAVGGPSTRLLDQVATPPTGAAPVPTTFSVRPRDLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLLDMKDGELDEMMNSLSQIFRWDLLVGERYGIKAAVRAERRRLDDEMESRRRHLLSADTANNALDALSQEGLSEEHVQQEKEVVGSGGGTREVIVASERKKQRHRKGQRKMLVDFDNDGNEVGEEGDDDINGANGMNERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKDHGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHXXXXLRFHCSLCVDTLQKCLKLREE 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 20790034 20791406 + Bpe002124.1 Bpe15g01214 116893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01214 329 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 213 305 IPR035209 GO:0003677
Bpe15g01214 329 PANTHER PROTEIN LEAFY 1 305 - -
Bpe15g01214 329 MobiDBLite consensus disorder prediction 179 216 - -
Bpe15g01214 329 Gene3D Protein LEAFY 209 328 IPR038276 -
Bpe15g01214 329 PANTHER PROTEIN LEAFY 1 305 IPR002910 GO:0003677|GO:0006355
Bpe15g01214 329 Pfam Floricaula / Leafy protein SAM domain 50 127 IPR035079 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01214 - - - qsu:112014158 451.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g01214 Bpe-Chr15:20790034 Bpe04g01781 Bpe-Chr4:23346746 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01781 . 1 376 Orphan Transcription Factor Family AT5G61850 61.8 8.2e-121 430.6
Bpe15g01214 . 1 304 Orphan Transcription Factor Family AT5G61850 57.9 8.8e-83 304.3
Bpe04g00902 CCT 1 157 Orphan Transcription Factor Family AT1G06040 64.3 2.3e-53 205.3
Bpe05g00975 CCT 1 153 Orphan Transcription Factor Family AT1G06040 63.1 1.7e-51 199.1
Bpe09g00270 . 1 110 Orphan Transcription Factor Family AT1G06040 64.5 1.4e-37 152.9
Bpe03g00871 . 1 106 Orphan Transcription Factor Family AT1G06040 66.0 2.3e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22666 PF17538 C_LFY_FLO 1.80E-58 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe15g01214 Bpe_Chr15 FPKM 2.057169 4.348294 2.194709 1.737035 9.404052 10.690543 9.931731 0.0 0.147505 0.0