Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01233 ATGAGGAGTGGGATCGAGCCTCGTTCGACTGCCTCATGTGCAGCCTGCAAATTGTTGAAAAGAAAATGCACTTCTGCTTGTATATTTGCACCCTATTTTCAATCGAACGAGACGAAGAAATTTGCCAAGGTTCACAAAGTGTTTGGGGCAAGCAACGTGAGCAAGATTCTAAACGAAGTACCTGAGCAGCAGCGAGAAGACACGGCCAATTCATTGGCTTTTGAAGCAGAAGCAAGACTCAGGGACCCTGTCTATGGCTGCATTGGTGCCATAGCTTTGCTGCAGAGAAAAATGGCGGAGCTTCAACATGATCTGGCCATTGCCAAATCTCGTCTCGCTTACTATACTACTTCTTCTTCCAAGTCAGTTGATGATGGTGTAACGATGATGGTGTATTCCAGTGACCTTTCTCCTTGCAGCGAATTGGGGGCCAATGTTTATCAGGATTCATCAGGTGCACTAAGCTTAGATGCAAACGTGAATCATTTTAGCAGCTTCCCATGTAATATATATAATATGTGA 522 44.64 MRSGIEPRSTASCAACKLLKRKCTSACIFAPYFQSNETKKFAKVHKVFGASNVSKILNEVPEQQREDTANSLAFEAEARLRDPVYGCIGAIALLQRKMAELQHDLAIAKSRLAYYTTSSSKSVDDGVTMMVYSSDLSPCSELGANVYQDSSGALSLDANVNHFSSFPCNIYNM 173
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
15 20922408 20922929 + Bpe002140.1 Bpe15g01233 116912
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01233 173 Coils Coil 91 111 - -
Bpe15g01233 173 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Bpe15g01233 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 133 - -
Bpe15g01233 173 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Bpe15g01233 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 133 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe15g01233 Bpe-Chr15:20922408 Bpe13g00079 Bpe-Chr13:4520189 5.11E-45 dispersed
Bpe15g00729 Bpe-Chr15:17804876 Bpe15g01233 Bpe-Chr15:20922408 1.76E-21 transposed
Bpe15g01174 Bpe-Chr15:20604486 Bpe15g01233 Bpe-Chr15:20922408 1.70E-42 wgd
Bpe15g01233 Bpe-Chr15:20922408 Bpe04g01798 Bpe-Chr4:23446699 4.89E-42 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22670 PF03195 LOB 2.10E-38 No_clan Bpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01233 - - egr:104454412 209.534