Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01279 ATGAGTTTTGTTTTCCGTGGAACAAGAGCTCCAGATATTGAAAATGGTTTATCTGGGTATACCTCAGAGCGGCGTGCCTTGCGTGTTCACTCCGGACGTCCTGTTAATTCCAACTCCCTTGCTTTTCTTGTCACAGTTCTGTTGCTATTCATGATACTTAACTCACATCAGATGTCTCCCAACTTTCTGCTTTGGCTTGTACTTGGTGTCTTTCTGATGGCCACCACCTTGAGAATGTATGCCACTTGTCAACAACTTCAAGCTCAGGCCCAAGCTCATGCTATGGCAGCCAGTGGCATTCTTGGTCACACTGAACTGCGGTTGCATATGCCACATTCTATTGCACTTGCAACGAGGGGGCGTTTGCAGGGCCTTAGACTTCAGCTTGCAGTACTTGACAGGGAATTTGATGACTTAGATTATGAAACCTTGAGAGCATTGGATTCCGACAATGCTCCATCAGCTCTATCAATGAGCGAAGAAGAAATAAACACTCTTCCAGTTCACAAGTACAAAATTGCTGGTTCTCAAAATGGAAATTCATTGGTTCAACAAGGCTCGTCTTCTACATCTGTTGAGAAAAAACAAGACTCTACTAATCCAGTGGGTAGTACAAATGGCACAGAAGATGAACTAACCTGCAGTGTTTGCTTGGAGCAAGTTAACGTTGGAGAACTCATTCGTAGTTTGCCATGCATGCATCAGTTCCATGCGACTTGCATTGATCCGTGGTTGCGGCAACAAGGGACATGCCCCGTTTGTAAGTTTAGGGCGGGGTCTGGATGGCATGAACAAGGCGAAAATGATTCTTCTTTCTTGGTCTGA 825 45.09 MSFVFRGTRAPDIENGLSGYTSERRALRVHSGRPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQAHAMAASGILGHTELRLHMPHSIALATRGRLQGLRLQLAVLDREFDDLDYETLRALDSDNAPSALSMSEEEINTLPVHKYKIAGSQNGNSLVQQGSSSTSVEKKQDSTNPVGSTNGTEDELTCSVCLEQVNVGELIRSLPCMHQFHATCIDPWLRQQGTCPVCKFRAGSGWHEQGENDSSFLV 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 21173037 21175306 + Bpe002184.1 Bpe15g01279 116958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01279 274 Pfam Ring finger domain 213 255 IPR001841 -
Bpe15g01279 274 MobiDBLite consensus disorder prediction 179 209 - -
Bpe15g01279 274 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Bpe15g01279 274 SMART ring_2 214 254 IPR001841 -
Bpe15g01279 274 SUPERFAMILY RING/U-box 209 258 - -
Bpe15g01279 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 260 IPR013083 -
Bpe15g01279 274 CDD RING-H2_PA-TM-RING 213 255 - -
Bpe15g01279 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 270 - -
Bpe15g01279 274 PANTHER TARGET OF ERK KINASE MPK-1 1 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00402 Bpe-Chr13:11746771 Bpe15g01279 Bpe-Chr15:21173037 5.53E-11 dispersed
Bpe14g01298 Bpe-Chr14:9922351 Bpe15g01279 Bpe-Chr15:21173037 2.92E-13 dispersed
Bpe15g01279 Bpe-Chr15:21173037 Bpe02g00063 Bpe-Chr2:487002 1.38E-13 dispersed
Bpe15g01279 Bpe-Chr15:21173037 Bpe14g01000 Bpe-Chr14:7388684 1.73E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01279 K16283 - csv:101216306 436.417