Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01323 ATGGGAAAGGAGAAGGTTCACATCAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAATCCACCACCACTGGGCACTTGATTTACAAGCTCGGTGGTATTGACAAGCGTGTCATTGAGAGATTTGAGAAAGAAGCTGCAGAGATGAACAAGCGTTCATTTAAGTATGCTTGGGTGTTGGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATTGATATTGCCTTGTGGAAGTTCCAAACCACAAAATACTATTGCACTGTTATTGATGCCCCTGGACATCGTGATTTTATCAAAAACATGATTACTGGAACTTCCCAAGCTGATTGTGCTGTCCTTATCATCGATTCAACAACTGGAGGGTTCGAAGCAGGTATTTCAAAGGATGGTCAAACTCGTGAGCATGCTCTTCTTGCCTTCACCCTTGGAGTAAGGCAAATGATATGCTGCTGCAACAAGATGGACGCCACAACTCCCAAATATTCTAAGGCAAGGTATGACGAAATTGTGAAGGAAGTGTCCTCCTACATGAAGAAGGTTGGTTATAACCCTGATAAAATTCCCTTCGTCCCCATCTCTGGGTTTGAAGGTGACAACATGATTGAGAGGTCCACAAACCTCGACTGGTACAAGGGTCCAACCCTTCTTGAGTCCCTTGACTTGATCCTAGAACCCAAGAGACCTTCTGACAAACCTCTTAGGCTACCACTTCAAGATGTTTACAAGATTGGTGGTATTGGAACTGTTCCAGTGGGACGCGTTGAGACTGGTGTTCTGAAGCCCGGTATGGTGGTTACTTTTGCTCCTACTGGTCTGACAACTGAAGTCAAGTCTGTTGAAATGCACCATGAGGCTCTGCAAGAAGCTCTTCCAGAAACGGCTGAAACTAAACGTAAGAGTGCAAAGCGTGCCTTGAAATCAGAAAAGGAGTTTCTAGAGTACACCTTGAAGTATCAACAAGTTATTGCTGAAAGAGATGCAGGCAATTGTTACCTCTTATCTTCATATCTTCTATTTGTAGCCATTGCTGTCCGAGATAAGCTTGAGTCCCTATGTAGGGAGTTGCAACGTCAAAACAAGAAGCTTATGGATGAATGCAAGCGAGTTTCAGCTGAGGGACAAAATTTGAGATTGGATTTATCTTCAAAGTTTCAAGATGCAATCAAGGGGGTGAGCACTAGGCTAGAAGAGCAGAAGGATGAATGTCTCTCACAGCTGAAAGAGAATGAGATGTTGAGGACTAAATTAAAACAGCTTGTTGATCAGTATGCTCTTTCTGAACAACAAAATGCACAGAAGTTGAAGCAGAAAACTTTGGAACTTCAACTTTCTGACTTAAAGATTAAGCAATTTGAGGAGAAATTGGTTCAGGTACAGTCCCAAATGATGTTATATGCAGACCAAGTGTCACAATTATCAGCAACAGAAAACAATTTGCGCTTGCAGCTAGCATCTGATGGAGAAAATTTCCAACAATTCCAAATATATGAAGCATTGTCAAAGAGGAATGAGTTATTTGAAACCTTTAAGCAAGACATCGAGAAGATGGCAAAATCTATCAAGGAACTCAAGAAGGAAAATGCATTTTTGAAGACCAAAACGGAGCGATCTGACTTTACTTTGATAGAGCTTCTTGATGAGCGGGAGTCCTTGAAGAAACAGCTGGAGAAGACGAAGAACCAGAAAGAAAAGCTCGAATCACTCTGTCGATCAATGCAGGCAGAACGGAAACAAAGTTCAAATGAAAATAAAAGCTTAGATTCTGTTCCAGAGTGA 1779 42.27 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFQTTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKARYDEIVKEVSSYMKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLESLDLILEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPTGLTTEVKSVEMHHEALQEALPETAETKRKSAKRALKSEKEFLEYTLKYQQVIAERDAGNCYLLSSYLLFVAIAVRDKLESLCRELQRQNKKLMDECKRVSAEGQNLRLDLSSKFQDAIKGVSTRLEEQKDECLSQLKENEMLRTKLKQLVDQYALSEQQNAQKLKQKTLELQLSDLKIKQFEEKLVQVQSQMMLYADQVSQLSATENNLRLQLASDGENFQQFQIYEALSKRNELFETFKQDIEKMAKSIKELKKENAFLKTKTERSDFTLIELLDERESLKKQLEKTKNQKEKLESLCRSMQAERKQSSNENKSLDSVPE 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 21413315 21428437 + Bpe002226.1 Bpe15g01323 117002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01323 592 Gene3D - 1 226 IPR027417 -
Bpe15g01323 592 Coils Coil 507 534 - -
Bpe15g01323 592 Pfam Elongation factor Tu domain 2 248 293 IPR004161 GO:0005525
Bpe15g01323 592 MobiDBLite consensus disorder prediction 571 592 - -
Bpe15g01323 592 SUPERFAMILY Translation proteins 231 292 IPR009000 -
Bpe15g01323 592 Coils Coil 542 583 - -
Bpe15g01323 592 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
Bpe15g01323 592 Coils Coil 396 437 - -
Bpe15g01323 592 Pfam Myosin-like coiled-coil protein 275 576 IPR026183 GO:0019905
Bpe15g01323 592 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Bpe15g01323 592 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Bpe15g01323 592 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Bpe15g01323 592 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Bpe15g01323 592 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Bpe15g01323 592 MobiDBLite consensus disorder prediction 573 592 - -
Bpe15g01323 592 Coils Coil 449 469 - -
Bpe15g01323 592 Gene3D Translation factors 229 297 - -
Bpe15g01323 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Bpe15g01323 592 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Bpe15g01323 592 PANTHER TRANSLATION FACTOR 1 292 - -
Bpe15g01323 592 CDD EF1_alpha_II 230 292 - -
Bpe15g01323 592 CDD EF1_alpha 9 227 - -
Bpe15g01323 592 PANTHER ELONGATION FACTOR 1-ALPHA 1 1 292 - -
Bpe15g01323 592 Coils Coil 342 373 - -
Bpe15g01323 592 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g01143 Bpe-Chr5:23694572 Bpe15g01323 Bpe-Chr15:21413315 0 dispersed
Bpe13g00367 Bpe-Chr13:11427618 Bpe15g01323 Bpe-Chr15:21413315 7.21E-70 dispersed
Bpe13g00859 Bpe-Chr13:14767824 Bpe15g01323 Bpe-Chr15:21413315 2.87E-56 dispersed
Bpe15g00536 Bpe-Chr15:16501481 Bpe15g01323 Bpe-Chr15:21413315 7.10E-71 dispersed
Bpe15g00654 Bpe-Chr15:17288699 Bpe15g01323 Bpe-Chr15:21413315 1.00E-33 dispersed
Bpe15g01323 Bpe-Chr15:21413315 Bpe04g01679 Bpe-Chr4:22788032 0 wgd
Bpe15g01323 Bpe-Chr15:21413315 Bpe08g00145 Bpe-Chr8:770039 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01323 K03231 - sind:105171896 586.26