Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01343 ATGATTCCTACTGACTGGATTTTCTTACTATTTCTCTTGACCTGTCTGCGTTCTTCAGCCATGGCTGCCCTCAATCTCACCATTCCTCATCAACACCCTCACCCAGATTTGGTTGCTATGCAAGTTCGAAGAGCAATCAATGAATCTGTATGGGGAAGACAAACACTTTCACTTCAAGAAAAAGATCAAACTTACCAGTGTCTCACCGGAAACCCAATCGACGATTGCTGGCGATGCGACTCCAACTGGGAGACGAATCGGCAAAGGCTCGCCGACTGCGGAATCGGATTCGGAAGAGACGCCATGGGGGGCAAGGGCGGCCAATTCTACATCGTAACGGACTCCTCCGATAAGGACCCGGCCAACCCCACCCCCGGTACTCTCCGGCACGCCGTGATCCAAGTGGAACCCCTCTGGATTATCTTCTCCAGAGACATGACTATAAAACTCAAACACGAACTCATCGTAAGCAGTTTCAAAACCATCGATGGCCGGGGAGCGAAAGTCCAGATAACCGGCGGCGGCTGCATTACTCTTCAGTTTATCTCGAACGTAATAATCCACAGCGTCTTCATCCACCATTGCGTACCCACCGGGAATTCAAACATTCGATCGAGTCCAACACACGTCGGTCACCGTGGCAGATCGGATGGCGACGGAATCTCAATCTACAGCTCGAGAAATATCTGGATCGATCATTGCTCCCTCTCGTACTGTACGGACGGACTTATAGACGCTATAATGGGGTCGACCGGAATCACCATCTCGAACAGCTATTTCTCACACCATAACGAGGTGATGCTTCTGGGGCACGACGATAGGCATGTACCAGACTCCGGTATGCAGGTGACCATCGCCTTCAACCACTTCGGCGAGGCGCTGGTGCAGCGTATGCCCAGGTGTAGACGCGGGTACATACACGTGGTCAACAATGATTTCACGGCGTGGGAGATGTACGCCATAGGAGGTAGTGCCAGTCCCACCATTAATAGCCAAGGGAATCGGTACACCGCTCCGCTCGACCCTTACGCGAAGGAGGTGACTAAGCGGGTGGAGACAGACGAGAGAGAGTGGAGCGACTGGAACTGGAGGACGGAGGGGGACATAATGGTGAACGGAGCGTTCTTCGTGCCATCAGGACAAGGCCTGAGCCCTCAGTTCACCAAAGCCTCAAGCGTGGAGCCCAAGTCCGTCGCTCTAATCGACCAACTCACCCTCTACTCCGGTGTGCTTGGAAACCCAGGGGACGGTGGTCAAAGCATAATATATCCAGGGTTCGACAGCACCACCAGTAGTAGCGGCTCAACCACTCCAAATCCGGGATCGAAGGGCGGAGAAGACGACTATTTTGGAATGATATTCGGAGATCGTTTTTCAAGCAGCTCCTCACCTCTCCGACCATTTCTTAGCTTATTAGTTCTTCCAAGTATATGGGTTAATATTTATCTGGGTTTTTACACAAGTAGATGTGTAATTCATTGA 1482 51.62 MIPTDWIFLLFLLTCLRSSAMAALNLTIPHQHPHPDLVAMQVRRAINESVWGRQTLSLQEKDQTYQCLTGNPIDDCWRCDSNWETNRQRLADCGIGFGRDAMGGKGGQFYIVTDSSDKDPANPTPGTLRHAVIQVEPLWIIFSRDMTIKLKHELIVSSFKTIDGRGAKVQITGGGCITLQFISNVIIHSVFIHHCVPTGNSNIRSSPTHVGHRGRSDGDGISIYSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHNEVMLLGHDDRHVPDSGMQVTIAFNHFGEALVQRMPRCRRGYIHVVNNDFTAWEMYAIGGSASPTINSQGNRYTAPLDPYAKEVTKRVETDEREWSDWNWRTEGDIMVNGAFFVPSGQGLSPQFTKASSVEPKSVALIDQLTLYSGVLGNPGDGGQSIIYPGFDSTTSSSGSTTPNPGSKGGEDDYFGMIFGDRFSSSSSPLRPFLSLLVLPSIWVNIYLGFYTSRCVIH 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 21538423 21540248 - Bpe002244.1 Bpe15g01343 117022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01343 493 MobiDBLite consensus disorder prediction 422 443 - -
Bpe15g01343 493 PANTHER PECTATE LYASE 10 420 - -
Bpe15g01343 493 SUPERFAMILY Pectin lyase-like 61 389 IPR011050 -
Bpe15g01343 493 Pfam Pectate lyase 151 334 IPR002022 -
Bpe15g01343 493 MobiDBLite consensus disorder prediction 423 442 - -
Bpe15g01343 493 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Bpe15g01343 493 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Bpe15g01343 493 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Bpe15g01343 493 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Bpe15g01343 493 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Bpe15g01343 493 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Bpe15g01343 493 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Bpe15g01343 493 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Bpe15g01343 493 Gene3D - 70 412 IPR012334 -
Bpe15g01343 493 PANTHER PECTATE LYASE 18-RELATED 10 420 IPR045032 GO:0030570
Bpe15g01343 493 SMART amb_all 145 342 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00676 Bpe-Chr4:4287461 Bpe15g01343 Bpe-Chr15:21538423 0 dispersed
Bpe04g00722 Bpe-Chr4:4653723 Bpe15g01343 Bpe-Chr15:21538423 2.69E-43 transposed
Bpe15g01045 Bpe-Chr15:19798888 Bpe15g01343 Bpe-Chr15:21538423 0 wgd
Bpe15g01343 Bpe-Chr15:21538423 Bpe04g01900 Bpe-Chr4:23991902 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01343 K01728 - csv:101205739 715.687