Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe15g01388 CTCATGTCCCCTGCCGATCCCCCTCTGTCAGCCACCGGCGTCGGTCTCGGTTATGGTATTGCCATAGCCGTCAGTGTTCTCGTCCTCATCTCCACCATAATGCTAGCTTCCTACGCCTGCGTCAGAGTCAAAGCTACCGCCTCCTATCGCAACAGAAGCGTCCGAGCCACTTCCGATGCCAACAGTGGCGTTACCAACGTGGCCGTCCGGTCCCCCTCGGAGCCGGTGGTGGTGGTGGTGGTGGGCCTGGATAGGCCAATAATCGAGTCGTATCCGAAGGTGGTGTTGGGTGAGAGCCTTCGGTTTCCGACGCCTAACCAGGGGGTTTGCTCCATCTGCTTGGCCGACTACCAACCAAAAGATTGTCTGCGCTGCATTCCAGAATGCCATCACTGTTTCCACGCGGATTGCATTGACGAGTGGCTTCGGGTGAGCGGAACGTGTCCTCTGTGTAGAAATTCCCCTGCTCCGTCGCCTCTTGCATCCCCTGTTTCTGAGTTCGTCCCACTGGCTTTCCACGCCAGGTGA 528 58.14 LMSPADPPLSATGVGLGYGIAIAVSVLVLISTIMLASYACVRVKATASYRNRSVRATSDANSGVTNVAVRSPSEPVVVVVVGLDRPIIESYPKVVLGESLRFPTPNQGVCSICLADYQPKDCLRCIPECHHCFHADCIDEWLRVSGTCPLCRNSPAPSPLASPVSEFVPLAFHAR 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 21805636 21806163 + Bpe002286.1 Bpe15g01388 117067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe15g01388 175 Pfam Ring finger domain 110 152 IPR001841 -
Bpe15g01388 175 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 17 158 - -
Bpe15g01388 175 CDD mRING-H2-C3H2C2D_ZSWM2 110 152 - -
Bpe15g01388 175 SUPERFAMILY RING/U-box 109 156 - -
Bpe15g01388 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 157 IPR013083 -
Bpe15g01388 175 SMART ring_2 110 151 IPR001841 -
Bpe15g01388 175 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 158 - -
Bpe15g01388 175 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00929 Bpe-Chr4:6227824 Bpe15g01388 Bpe-Chr15:21805636 2.03E-39 dispersed
Bpe05g01005 Bpe-Chr5:22774800 Bpe15g01388 Bpe-Chr15:21805636 9.36E-39 dispersed
Bpe07g00071 Bpe-Chr7:533142 Bpe15g01388 Bpe-Chr15:21805636 2.71E-33 dispersed
Bpe14g00967 Bpe-Chr14:7155677 Bpe15g01388 Bpe-Chr15:21805636 1.05E-16 dispersed
Bpe15g01388 Bpe-Chr15:21805636 Bpe09g00603 Bpe-Chr9:14749463 9.86E-16 dispersed
Bpe15g01388 Bpe-Chr15:21805636 Bpe05g00694 Bpe-Chr5:20561452 2.70E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe15g01388 - - tcc:108663824 224.172