Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0009 ATGGGCGAGGCCGTGGTCGTCAGCTCTGAGGATGTGGATGTGGATGTGGATGTGGATGTTGATTATGTCAGGCTCCACCACAACGACGATATGGCGGACGCAGAGAGTATGGGCACTCACAGACCTAACAGAGATGCCAGTTCGACTGGGTTTGGGGTCGGGATTAAGTGGGAGCGCTTCTTGCCCAAGATGATGCTCAGGGTTTTGCTCGTCGAAGCCGACGATTCCACCAGACAGATTATCACTGCCCTTCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAGATTCTCAAAGAAAGGCCCCGTAATGTAGATCTTATATTGGCGGAAGTTGAATTGCCATCAATCTCTGGATTTGCTCTGCTAACTCTGATCATGGAGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCCTCCGAAGATTCTATCAGCACTGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGAAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCGTCCAATGTGAGAACTGACGTTCAAGAAAAGGTTGAAGTCACTTCTGAAAATGAGACTGCAAGCAATCACTCAACTGGTTGTGCTGCTGGAGTTCAGAGGAATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCATGTACGAAGGTAGATTTTGAGGCTGGAAGTAAGATGCAGGAAAATTCACAGCCTAGGCAGGGAAAAGCCTCTCCCAACGACTTCAAGCTACAAAAAGATGAACATCACATCAATTTGAGTCAAAGATTGTTTATGCATGAAAACGAAACTGGAGGATTGGCAATGAGTTGCTATGTCAATACTGATTTACCAATCACACTAAGCATGGGTCTTGAGCCGATCAATGATGGGAGAAATCCTAATATTGCTAGTGAAGTAGGTGATGATAAGGATTTGCTTGCCAACCCATCCAGAGGTGCAACTGCCTTGGATCATGCCTGTATCAAGTATCCCGATAACTACCAAAAAAGTTCTCCTTCCCACAATTTTGCTGCAAATAATTTCGGCTCTGCTCTTCATTTGGATCTTTCTCTGAGAAGATGTCAACCTAACGATTTTGAGGAACGTGCTACGGGACGGGCAACCCTCAAACATTCTAGTGCTTCAGCTTTTACAAGATACACTTTCAGGCCATTGCAATCACTTCAAGCAAAATCAACCAGTATCTGTGATGAGCAAAAAGAATTTGGAAGTAACCCCGAGCATATTGGAAGTATTGCTGCTACTTCTACCTCTGATGCCATTAATCCTACGCCAAATCTGCAAAAGAGTAATACTTCTATGCCTATGATCACGAGTCAATCTACTCATTCTGAAGTTGCTAAATCAAGTACTTCAGAGACGGTAATCCCTCTTCAAGTTTCAGTGAAAAATTTGATGTCTAATAATCAACGCTCGGGCTCAGGCTATAGCTCTTTACCTCCTCACAACTTCTGCACACAACGTGGTAGCCCATCGTCTCCATGCCGAACTTCAGCCACCCATCCAGAACTCATCTTTGGGAAACAGACGGTTTATCCCTCAAACTTTGAGAATCATAATTTGGAGCAATTTCTGAACCAGCATCACAACGTAAGCAGTCCAGCAAGCAGAAAGATAGAAAACTCGGGCCAGTCTGCAGAAAATCAAGGCCATATATCACCTACCACTGATCACAGTGCAAACAGTAATGTATGTTGTGGCAATACAACTCATGTTGGAAGTGTGGGATATCCTAGCACCTGCGGAAGCAACAGTAATTTAGATCGGACTGGGGTTGCAAGAGTTACAGCTGAGAGCAGAAATGAAGAAGCTTTGTTTTGTCAAGGAGGAGATTCTCACCGGTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAAAGAAAAGATAGATGTTATGAGAAAAAGGTCCGTTATGAGAGTAGAAAAAAGCTGGCAGAGCAGCGTCCTAGAGTGAAGGGACAGTTTGTCCGTAGAGTATGTACTGATCCATTGCCTGCAGAAACCAACGACAATACATCCAACAGTTAG 2106 44.21 MGEAVVVSSEDVDVDVDVDVDYVRLHHNDDMADAESMGTHRPNRDASSTGFGVGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMEHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNVRTDVQEKVEVTSENETASNHSTGCAAGVQRNNKNIEKGSDTQSSCTKVDFEAGSKMQENSQPRQGKASPNDFKLQKDEHHINLSQRLFMHENETGGLAMSCYVNTDLPITLSMGLEPINDGRNPNIASEVGDDKDLLANPSRGATALDHACIKYPDNYQKSSPSHNFAANNFGSALHLDLSLRRCQPNDFEERATGRATLKHSSASAFTRYTFRPLQSLQAKSTSICDEQKEFGSNPEHIGSIAATSTSDAINPTPNLQKSNTSMPMITSQSTHSEVAKSSTSETVIPLQVSVKNLMSNNQRSGSGYSSLPPHNFCTQRGSPSSPCRTSATHPELIFGKQTVYPSNFENHNLEQFLNQHHNVSSPASRKIENSGQSAENQGHISPTTDHSANSNVCCGNTTHVGSVGYPSTCGSNSNLDRTGVARVTAESRNEEALFCQGGDSHRSSQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRRVCTDPLPAETNDNTSNS 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 551651 556170 - CaPI482276_01g000090.1 Cam01g0009 117091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0009 701 ProSiteProfiles CCT domain profile. 642 684 IPR010402 GO:0005515(InterPro)
Cam01g0009 701 SMART REC_2 66 181 IPR001789 GO:0000160(InterPro)
Cam01g0009 701 CDD psREC_PRR 68 171 - -
Cam01g0009 701 ProSiteProfiles Response regulatory domain profile. 67 185 IPR001789 GO:0000160(InterPro)
Cam01g0009 701 SUPERFAMILY CheY-like 60 191 IPR011006 -
Cam01g0009 701 Pfam CCT motif 642 684 IPR010402 GO:0005515(InterPro)
Cam01g0009 701 MobiDBLite consensus disorder prediction 195 266 - -
Cam01g0009 701 MobiDBLite consensus disorder prediction 195 261 - -
Cam01g0009 701 MobiDBLite consensus disorder prediction 554 584 - -
Cam01g0009 701 MobiDBLite consensus disorder prediction 493 522 - -
Cam01g0009 701 Gene3D - 64 255 - -
Cam01g0009 701 PANTHER TWO-COMPONENT RESPONSE REGULATOR 54 276 IPR045279 GO:0009736(InterPro)
Cam01g0009 701 Pfam Response regulator receiver domain 68 179 IPR001789 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0009 K12130 - - csv:101209788 1239.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0009 Cam-Chr1:551651 Cam04g0853 Cam-Chr4:22739859 5.80E-43 dispersed
Cam01g0009 Cam-Chr1:551651 Cam08g2214 Cam-Chr8:27426644 3.40E-19 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g2214 . 336 540 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cam11g0360 . 16 343 Response Regulator Gene Family AT4G31920 51.8 2.3e-79 293.5
Cam06g0476 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.0e-71 268.1
Cam05g0746 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.7e-70 261.5
Cam08g2214 . 295 543 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Cam05g0746 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.7e-40 164.1
Cam05g1810 . 93 255 Response Regulator Gene Family AT1G67710 53.8 2.9e-40 163.3
Cam06g1357 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.1e-102 368.6
Cam11g0360 . 18 362 Response Regulator Gene Family AT2G25180 54.9 1.2e-84 311.2
Cam05g0746 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cam08g2214 . 295 540 Response Regulator Gene Family AT2G25180 55.6 8.9e-69 258.5
Cam06g0476 . 92 325 Response Regulator Gene Family AT2G01760 51.4 7.3e-54 208.0
Cam06g1357 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.1e-49 191.4
Cam08g2214 . 356 543 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Cam08g2214 . 293 542 Response Regulator Gene Family AT5G58080 50.6 6.6e-62 235.7
Cam06g0476 . 30 255 Response Regulator Gene Family AT4G16110 66.7 2.1e-79 293.9
Cam05g0746 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Cam05g1810 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.0e-61 234.2
Cam08g2214 . 294 519 Response Regulator Gene Family AT4G16110 54.5 9.3e-59 225.3
Cam06g1357 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.7e-57 218.8
Cam11g0360 . 21 269 Response Regulator Gene Family AT4G16110 51.3 4.9e-52 203.0
Cam06g1813 . 16 177 Response Regulator Gene Family AT3G48100 69.3 9.5e-54 206.8
Cam05g2692 . 29 162 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cam01g0759 . 11 151 Response Regulator Gene Family AT3G48100 60.3 1.2e-40 163.3
Cam04g0440 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.1e-40 162.5
Cam05g2876 . 4 170 Response Regulator Gene Family AT3G48100 53.3 1.7e-39 159.5
Cam10g1583 . 3 156 Response Regulator Gene Family AT3G48100 52.6 1.9e-38 156.0
Cam07g0526 . 25 156 Response Regulator Gene Family AT3G48100 56.8 8.1e-37 150.6
Cam05g2692 . 1 201 Response Regulator Gene Family AT1G59940 60.0 3.0e-55 212.6
Cam06g1813 . 32 177 Response Regulator Gene Family AT1G59940 66.4 1.8e-47 186.8
Cam01g0759 . 5 152 Response Regulator Gene Family AT1G59940 58.8 2.8e-40 162.9
Cam10g1583 . 8 154 Response Regulator Gene Family AT1G59940 57.1 1.0e-39 161.0
Cam05g2876 . 11 156 Response Regulator Gene Family AT1G59940 58.9 5.2e-39 158.7
Cam04g0440 . 11 154 Response Regulator Gene Family AT1G59940 56.3 8.9e-39 157.9
Cam07g0526 . 20 155 Response Regulator Gene Family AT1G59940 60.3 4.4e-38 155.6
Cam05g2692 . 28 185 Response Regulator Gene Family AT1G10470 71.5 5.7e-54 208.0
Cam06g1813 . 32 177 Response Regulator Gene Family AT1G10470 67.8 1.1e-46 183.7
Cam10g1583 . 10 162 Response Regulator Gene Family AT1G10470 55.6 1.0e-39 160.6
Cam01g0759 . 5 157 Response Regulator Gene Family AT1G10470 57.5 1.4e-39 160.2
Cam04g0440 . 17 154 Response Regulator Gene Family AT1G10470 59.4 2.6e-38 156.0
Cam05g2876 . 11 178 Response Regulator Gene Family AT1G10470 51.8 4.4e-38 155.2
Cam07g0526 . 25 155 Response Regulator Gene Family AT1G10470 61.1 1.7e-37 153.3
Cam06g1813 . 16 177 Response Regulator Gene Family AT3G48100 69.3 9.5e-54 206.8
Cam05g2692 . 29 162 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cam01g0759 . 11 151 Response Regulator Gene Family AT3G48100 60.3 1.2e-40 163.3
Cam04g0440 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.1e-40 162.5
Cam05g2876 . 4 170 Response Regulator Gene Family AT3G48100 53.3 1.7e-39 159.5
Cam10g1583 . 3 156 Response Regulator Gene Family AT3G48100 52.6 1.9e-38 156.0
Cam07g0526 . 25 156 Response Regulator Gene Family AT3G48100 56.8 8.1e-37 150.6
Cam06g1813 . 28 166 Response Regulator Gene Family AT5G62920 74.8 1.0e-50 196.8
Cam05g2692 . 25 175 Response Regulator Gene Family AT5G62920 66.9 7.1e-49 190.7
Cam01g0759 . 11 151 Response Regulator Gene Family AT5G62920 60.3 3.6e-40 161.8
Cam04g0440 . 12 156 Response Regulator Gene Family AT5G62920 57.2 1.0e-39 160.2
Cam10g1583 . 10 156 Response Regulator Gene Family AT5G62920 55.1 6.7e-39 157.5
Cam05g2876 . 11 173 Response Regulator Gene Family AT5G62920 51.8 1.6e-37 152.9
Cam06g1813 . 29 182 Response Regulator Gene Family AT1G19050 71.3 4.5e-52 201.4
Cam05g2692 . 23 185 Response Regulator Gene Family AT1G19050 58.5 5.3e-45 177.9
Cam05g2876 . 8 161 Response Regulator Gene Family AT1G19050 53.9 1.7e-38 156.4
Cam04g0440 . 11 156 Response Regulator Gene Family AT1G19050 54.8 2.8e-38 155.6
Cam10g1583 . 8 156 Response Regulator Gene Family AT1G19050 53.0 8.2e-38 154.1
Cam01g0759 . 7 154 Response Regulator Gene Family AT1G19050 54.1 1.1e-37 153.7
Cam07g0526 . 25 156 Response Regulator Gene Family AT1G19050 60.6 1.8e-37 152.9
Cam04g0440 . 8 264 Response Regulator Gene Family AT2G41310 54.2 2.9e-60 228.8
Cam10g1583 . 1 157 Response Regulator Gene Family AT2G41310 71.3 1.4e-54 209.9
Cam01g0759 . 1 153 Response Regulator Gene Family AT2G41310 64.9 3.9e-49 191.8
Cam08g1013 . 7 158 Response Regulator Gene Family AT2G41310 59.1 9.2e-43 170.6
Cam05g2692 . 25 158 Response Regulator Gene Family AT2G41310 59.2 1.0e-41 167.2
Cam06g1813 . 31 162 Response Regulator Gene Family AT2G41310 61.9 3.0e-41 165.6
Cam07g0526 . 19 156 Response Regulator Gene Family AT2G41310 55.6 5.6e-40 161.4
Cam04g0440 . 8 264 Response Regulator Gene Family AT3G57040 53.1 1.7e-63 239.6
Cam10g1583 . 1 157 Response Regulator Gene Family AT3G57040 74.5 1.2e-56 216.9
Cam01g0759 . 8 153 Response Regulator Gene Family AT3G57040 67.8 1.6e-50 196.4
Cam05g2876 . 4 160 Response Regulator Gene Family AT3G57040 64.2 5.3e-49 191.4
Cam05g2692 . 25 158 Response Regulator Gene Family AT3G57040 59.4 1.9e-43 172.9
Cam08g1013 . 11 174 Response Regulator Gene Family AT3G57040 56.4 1.9e-43 172.9
Cam06g1813 . 28 171 Response Regulator Gene Family AT3G57040 58.2 1.8e-41 166.4
Cam07g0526 . 22 156 Response Regulator Gene Family AT3G57040 56.7 3.8e-39 158.7
Cam06g1813 . 26 182 Response Regulator Gene Family AT1G74890 70.8 5.3e-53 204.5
Cam05g2692 . 25 187 Response Regulator Gene Family AT1G74890 61.2 4.3e-47 184.9
Cam05g2876 . 5 161 Response Regulator Gene Family AT1G74890 56.1 1.1e-39 160.2
Cam04g0440 . 12 172 Response Regulator Gene Family AT1G74890 52.1 2.5e-39 159.1
Cam01g0759 . 11 146 Response Regulator Gene Family AT1G74890 60.3 5.7e-39 157.9
Cam10g1583 . 8 154 Response Regulator Gene Family AT1G74890 54.4 2.2e-38 156.0
Cam07g0526 . 25 152 Response Regulator Gene Family AT1G74890 60.2 5.3e-37 151.4
Cam07g0526 . 25 157 Response Regulator Gene Family AT2G40670 70.1 2.0e-47 185.7
Cam05g2692 . 26 159 Response Regulator Gene Family AT2G40670 56.9 3.2e-40 161.8
Cam10g1583 . 6 156 Response Regulator Gene Family AT2G40670 54.6 7.0e-40 160.6
Cam06g1813 . 32 163 Response Regulator Gene Family AT2G40670 60.0 3.0e-38 155.2
Cam04g0440 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.3e-37 150.6
Cam07g0526 . 1 157 Response Regulator Gene Family AT3G56380 64.6 2.9e-48 188.3
Cam05g2692 . 23 159 Response Regulator Gene Family AT3G56380 52.9 2.9e-40 161.8
Cam06g1813 . 18 163 Response Regulator Gene Family AT3G56380 57.8 5.0e-40 161.0
Cam10g1583 . 6 156 Response Regulator Gene Family AT3G56380 52.6 9.5e-39 156.8
Cam01g0759 . 11 154 Response Regulator Gene Family AT3G56380 54.5 1.8e-37 152.5
Cam05g2876 . 3 151 Response Regulator Gene Family AT3G56380 54.7 8.9e-37 150.2
Cam08g2214 . 336 540 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cam06g0476 . 30 255 Response Regulator Gene Family AT4G16110 66.7 2.1e-79 293.9
Cam05g0746 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Cam05g1810 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.0e-61 234.2
Cam08g2214 . 294 519 Response Regulator Gene Family AT4G16110 54.5 9.3e-59 225.3
Cam06g1357 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.7e-57 218.8
Cam11g0360 . 21 269 Response Regulator Gene Family AT4G16110 51.3 4.9e-52 203.0
Cam11g0360 . 16 343 Response Regulator Gene Family AT4G31920 51.8 2.3e-79 293.5
Cam06g0476 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.0e-71 268.1
Cam05g0746 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.7e-70 261.5
Cam08g2214 . 295 543 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Cam05g0746 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.7e-40 164.1
Cam05g1810 . 93 255 Response Regulator Gene Family AT1G67710 53.8 2.9e-40 163.3
Cam06g1357 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.1e-102 368.6
Cam11g0360 . 18 362 Response Regulator Gene Family AT2G25180 54.9 1.2e-84 311.2
Cam05g0746 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cam08g2214 . 295 540 Response Regulator Gene Family AT2G25180 55.6 8.9e-69 258.5
Cam06g0476 . 92 325 Response Regulator Gene Family AT2G01760 51.4 7.3e-54 208.0
Cam06g1357 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.1e-49 191.4
Cam08g2214 . 356 543 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Cam08g2214 . 293 542 Response Regulator Gene Family AT5G58080 50.6 6.6e-62 235.7
Cam04g1240 . 567 1112 Response Regulator Gene Family AT5G61380 50.3 4.5e-140 495.4
Cam04g0853 . 38 205 Response Regulator Gene Family AT5G60100 68.6 3.3e-54 209.5
Cam01g0009 . 55 192 Response Regulator Gene Family AT5G60100 61.6 2.1e-45 180.3
Cam04g0853 . 67 205 Response Regulator Gene Family AT5G24470 55.4 3.4e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007665 1 2 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51168 PF00072 Response_reg 7.10E-21 CL0304 Cam TR