Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0009 ATGGGCGAGGCCGTGGTCGTCAGCTCTGAGGATGTGGATGTGGATGTGGATGTGGATGTTGATTATGTCAGGCTCCACCACAACGACGATATGGCGGACGCAGAGAGTATGGGCACTCACAGACCTAACAGAGATGCCAGTTCGACTGGGTTTGGGGTCGGGATTAAGTGGGAGCGCTTCTTGCCCAAGATGATGCTCAGGGTTTTGCTCGTCGAAGCCGACGATTCCACCAGACAGATTATCACTGCCCTTCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAGATTCTCAAAGAAAGGCCCCGTAATGTAGATCTTATATTGGCGGAAGTTGAATTGCCATCAATCTCTGGATTTGCTCTGCTAACTCTGATCATGGAGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCCTCCGAAGATTCTATCAGCACTGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGAAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCGTCCAATGTGAGAACTGACGTTCAAGAAAAGGTTGAAGTCACTTCTGAAAATGAGACTGCAAGCAATCACTCAACTGGTTGTGCTGCTGGAGTTCAGAGGAATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCATGTACGAAGGTAGATTTTGAGGCTGGAAGTAAGATGCAGGAAAATTCACAGCCTAGGCAGGGAAAAGCCTCTCCCAACGACTTCAAGCTACAAAAAGATGAACATCACATCAATTTGAGTCAAAGATTGTTTATGCATGAAAACGAAACTGGAGGATTGGCAATGAGTTGCTATGTCAATACTGATTTACCAATCACACTAAGCATGGGTCTTGAGCCGATCAATGATGGGAGAAATCCTAATATTGCTAGTGAAGTAGGTGATGATAAGGATTTGCTTGCCAACCCATCCAGAGGTGCAACTGCCTTGGATCATGCCTGTATCAAGTATCCCGATAACTACCAAAAAAGTTCTCCTTCCCACAATTTTGCTGCAAATAATTTCGGCTCTGCTCTTCATTTGGATCTTTCTCTGAGAAGATGTCAACCTAACGATTTTGAGGAACGTGCTACGGGACGGGCAACCCTCAAACATTCTAGTGCTTCAGCTTTTACAAGATACACTTTCAGGCCATTGCAATCACTTCAAGCAAAATCAACCAGTATCTGTGATGAGCAAAAAGAATTTGGAAGTAACCCCGAGCATATTGGAAGTATTGCTGCTACTTCTACCTCTGATGCCATTAATCCTACGCCAAATCTGCAAAAGAGTAATACTTCTATGCCTATGATCACGAGTCAATCTACTCATTCTGAAGTTGCTAAATCAAGTACTTCAGAGACGGTAATCCCTCTTCAAGTTTCAGTGAAAAATTTGATGTCTAATAATCAACGCTCGGGCTCAGGCTATAGCTCTTTACCTCCTCACAACTTCTGCACACAACGTGGTAGCCCATCGTCTCCATGCCGAACTTCAGCCACCCATCCAGAACTCATCTTTGGGAAACAGACGGTTTATCCCTCAAACTTTGAGAATCATAATTTGGAGCAATTTCTGAACCAGCATCACAACGTAAGCAGTCCAGCAAGCAGAAAGATAGAAAACTCGGGCCAGTCTGCAGAAAATCAAGGCCATATATCACCTACCACTGATCACAGTGCAAACAGTAATGTATGTTGTGGCAATACAACTCATGTTGGAAGTGTGGGATATCCTAGCACCTGCGGAAGCAACAGTAATTTAGATCGGACTGGGGTTGCAAGAGTTACAGCTGAGAGCAGAAATGAAGAAGCTTTGTTTTGTCAAGGAGGAGATTCTCACCGGTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAAAGAAAAGATAGATGTTATGAGAAAAAGGTCCGTTATGAGAGTAGAAAAAAGCTGGCAGAGCAGCGTCCTAGAGTGAAGGGACAGTTTGTCCGTAGAGTATGTACTGATCCATTGCCTGCAGAAACCAACGACAATACATCCAACAGTTAG 2106 44.21 MGEAVVVSSEDVDVDVDVDVDYVRLHHNDDMADAESMGTHRPNRDASSTGFGVGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMEHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNVRTDVQEKVEVTSENETASNHSTGCAAGVQRNNKNIEKGSDTQSSCTKVDFEAGSKMQENSQPRQGKASPNDFKLQKDEHHINLSQRLFMHENETGGLAMSCYVNTDLPITLSMGLEPINDGRNPNIASEVGDDKDLLANPSRGATALDHACIKYPDNYQKSSPSHNFAANNFGSALHLDLSLRRCQPNDFEERATGRATLKHSSASAFTRYTFRPLQSLQAKSTSICDEQKEFGSNPEHIGSIAATSTSDAINPTPNLQKSNTSMPMITSQSTHSEVAKSSTSETVIPLQVSVKNLMSNNQRSGSGYSSLPPHNFCTQRGSPSSPCRTSATHPELIFGKQTVYPSNFENHNLEQFLNQHHNVSSPASRKIENSGQSAENQGHISPTTDHSANSNVCCGNTTHVGSVGYPSTCGSNSNLDRTGVARVTAESRNEEALFCQGGDSHRSSQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRRVCTDPLPAETNDNTSNS 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 551651 556170 - CaPI482276_01g000090.1 Cam01g0009 117091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0009 701 ProSiteProfiles CCT domain profile. 642 684 IPR010402 GO:0005515(InterPro)
Cam01g0009 701 SMART REC_2 66 181 IPR001789 GO:0000160(InterPro)
Cam01g0009 701 CDD psREC_PRR 68 171 - -
Cam01g0009 701 ProSiteProfiles Response regulatory domain profile. 67 185 IPR001789 GO:0000160(InterPro)
Cam01g0009 701 SUPERFAMILY CheY-like 60 191 IPR011006 -
Cam01g0009 701 Pfam CCT motif 642 684 IPR010402 GO:0005515(InterPro)
Cam01g0009 701 MobiDBLite consensus disorder prediction 195 266 - -
Cam01g0009 701 MobiDBLite consensus disorder prediction 195 261 - -
Cam01g0009 701 MobiDBLite consensus disorder prediction 554 584 - -
Cam01g0009 701 MobiDBLite consensus disorder prediction 493 522 - -
Cam01g0009 701 Gene3D - 64 255 - -
Cam01g0009 701 PANTHER TWO-COMPONENT RESPONSE REGULATOR 54 276 IPR045279 GO:0009736(InterPro)
Cam01g0009 701 Pfam Response regulator receiver domain 68 179 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0009 Cam-Chr1:551651 Cam04g0853 Cam-Chr4:22739859 5.80E-43 dispersed
Cam01g0009 Cam-Chr1:551651 Cam08g2214 Cam-Chr8:27426644 3.40E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51168 PF00072 Response_reg 7.10E-21 CL0304 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0009 K12130 - csv:101209788 1239.94