Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0022 ATGGCTTCGGATCCGAAGGTTCATCTATTTGAAGAAGTGGCAAAGCACAACAAAACCAAAGATTGCTGGCTTGTAATCTCTGGGAAGGTTTATGATGTAACTCCTTTCATGGAGGATCACCCCGGAGGTGATGAAGTATTATTGTCAGCAACTGGAAAAGATGCTACGAACGATTTCGAAGATGTTGGGCACAGCGATTCAGCAAGAGAAATGATGGACAAATATTACATTGGAGAAATTGATCCTTCAACAGTTCCTTTGAAGAAGATTTACATTCCATCACAACAAACGCAGTATAACCCAGATAAGACACCCGAGTTTGTGATTAAGATCTTGCAGTTTTTGGTTCCCATATTGATTTTGGGTTTGGCGTTTGCTGTTCGACACTACACCAAGAATGAATAA 405 40.49 MASDPKVHLFEEVAKHNKTKDCWLVISGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKKIYIPSQQTQYNPDKTPEFVIKILQFLVPILILGLAFAVRHYTKNE 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 631760 633343 - CaPI482276_01g000220.1 Cam01g0022 117104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0022 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Cam01g0022 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 87 IPR036400 -
Cam01g0022 134 PANTHER CYTOCHROME B5 6 132 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cam01g0022 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cam01g0022 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cam01g0022 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cam01g0022 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cam01g0022 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
Cam01g0022 134 Gene3D - 1 86 IPR036400 -
Cam01g0022 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cam01g0022 134 SMART Cyt_b5_2 8 81 IPR001199 -
Cam01g0022 134 FunFam Cytochrome b5 type B 2 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0022 Cam-Chr1:631760 Cam05g0384 Cam-Chr5:3533029 1.00E-52 dispersed
Cam06g0285 Cam-Chr6:4802720 Cam01g0022 Cam-Chr1:631760 8.70E-33 transposed
Cam06g0340 Cam-Chr6:5492104 Cam01g0022 Cam-Chr1:631760 2.00E-09 transposed
Cam01g0022 Cam-Chr1:631760 Cam05g0067 Cam-Chr5:1113293 2.20E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0022 K23490 - csv:101207109 273.092