Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g0042 | ATGATCAACAACAACTACAACAAGCTTCACTCCTCCCGCTCCCTCGACTCTACTCCGGCCACCTCCTTCCACCTTTCCCCCAATGATCCTCCGCCACCTCCACCCTCCTCCTCCCTCCGCTACCGCTCTCGTATCCTTATCATCTCCTTCCTCTCCGTCCTCCTCATCGCTGCCTCCGTGGTCTCCGCCGCCGTGCTCGTCCGGTCCCATATCGCGTCGAGCCAACCCAATTTCCCTCACAACAAGCCCTCCCAAGCCATCTCCCGAGCCTGCAGCCACACTCTGTACCCATCTCTCTGCCTCTCTTCTCTTCTCTCCTTCCCCGGCTCTCTCTCCGCCGACGTCCATGACCTTGTTCACATCTCTCTCAACTTAACTCTTCAACATCTCACCAAAGCTCTTTATTCCACTTCTCAAATCCCCATCTCCCAAATCTCCAACGACCCTTTAGCCCATTCCGCTTATGAAGACTGCATGGAGCTTCTAAACGACGCCGTTGACGCTTTTTCCCTCTCTCTCTTTTCCACTGAAGCTTCTAATCACGACGTCATGACGTGGCTTAGTGCCGCATTGACTTATCATGACACGTGTACGGATGGATTTGCGGATGTGGCTGACTTGGCAGTTAAGGATCAGGTGGAGGCGAAGTTGAGCGATTTGTCGGAGATGATTAGTAATTCTTTGGCTATATTTTCTGGGTTTGGTGGTGGGGATTTGCCGGTGGAGAATAGGCGCCGCCGCCGGTTGATGGAGAGTGGTACACAGCCGTGGGCGGCGGAGAATGGTGGTGATGGGGGTTTTCCACAGTGGGTGAGTGGGAAGGATCGGAGGCTTTTGGCTACTCCTATTTCGGCGATTCAGGCGGATATTGTGGTGGCTAAGGATGGTTCTGGCAAATTCAAGACGGTGGCTGAGGCCATTGACGCGGCTCCGTCGTCGAGTGGCCGCCGGATTGTTATCTACATTAAGGCCGGAAAGTACGAAGAGGAGAATTTGAAGGTGGGAAGGAAGAAAACAAACTTGATGTTTGTGGGAGATGGAAAGGGCATAACGGTCATTTCAGGTGGAAAAAGTATCTTTGACAAAGTTACCACTTTTCGCACCGCCACCTTTGCGGGTTCGGGAACAGGAATAATTTTAAGAGACATGACGTTTGAGAACACAGCAGGAGCAAGCAAGCACCAAGCAGTGGCATTGCGCTTGAGCGCTGACCACGCTGTGGTATACCGTTGCAACATCATTGGTTATCAAGACACTCTCTATGTGCACTCAAACCGCCAATTCTTTCGAGAATGCGACATCTACGGTACGGTGGACTTCATCTTTGGGAATGCGGTAGTTGTGTTCCAAAGTTGCAACATCTATGCGCGAAAGCCAATGGCGGGGCAAAAGAACACCATCACTGCCCAAGACCGGAAGGACCCAAACCAAAACACTGGAATCTCCATCCATGCTTGTAAGATCATTGCCACTAGCGACCTCGAAGCCTCCAAGGGTTCTTTCCCCACCTACCTGGGTCGTCCTTGGAAATTATACTCTAGAGTGGTGTACATGGTATCTTCCATGGGCGACCATATTCACCCACGTGGTTGGCTGGAGTGGCAAGGTTCTTTTGCTCTCGACACTCTTTACTACGGCGAGTATATGAATTCTGGGCCAGGTGCCGCTGTTGGGCAGCGGGTCAAGTGGCCGGGTTATCGGGTCATAACTTCCACGGTAGAAGCCTCCAAATTTACTGTTGGACAATTCATTTATGGCTCTTCTTGGTTGCCCTCCACTGGAGTCTCCTTTTCAGCTGGATTATCCGCTAACTAA | 1815 | 51.74 | MINNNYNKLHSSRSLDSTPATSFHLSPNDPPPPPPSSSLRYRSRILIISFLSVLLIAASVVSAAVLVRSHIASSQPNFPHNKPSQAISRACSHTLYPSLCLSSLLSFPGSLSADVHDLVHISLNLTLQHLTKALYSTSQIPISQISNDPLAHSAYEDCMELLNDAVDAFSLSLFSTEASNHDVMTWLSAALTYHDTCTDGFADVADLAVKDQVEAKLSDLSEMISNSLAIFSGFGGGDLPVENRRRRRLMESGTQPWAAENGGDGGFPQWVSGKDRRLLATPISAIQADIVVAKDGSGKFKTVAEAIDAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSIFDKVTTFRTATFAGSGTGIILRDMTFENTAGASKHQAVALRLSADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMAGQKNTITAQDRKDPNQNTGISIHACKIIATSDLEASKGSFPTYLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEASKFTVGQFIYGSSWLPSTGVSFSAGLSAN | 604 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 793315 | 798848 | - | CaPI482276_01g000420.1 | Cam01g0042 | 117124 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g0042 | 604 | Gene3D | - | 283 | 601 | IPR012334 | - | |
Cam01g0042 | 604 | ProSitePatterns | Pectinesterase signature 2. | 434 | 443 | IPR033131 | - | |
Cam01g0042 | 604 | Pfam | Plant invertase/pectin methylesterase inhibitor | 86 | 230 | IPR006501 | GO:0004857(InterPro) | |
Cam01g0042 | 604 | NCBIfam | pectinesterase inhibitor domain | 60 | 232 | IPR006501 | GO:0004857(InterPro) | |
Cam01g0042 | 604 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cam01g0042 | 604 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cam01g0042 | 604 | PANTHER | PECTINESTERASE | 44 | 592 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
Cam01g0042 | 604 | CDD | PMEI-like_3 | 90 | 236 | - | - | |
Cam01g0042 | 604 | SUPERFAMILY | Pectin lyase-like | 284 | 600 | IPR011050 | - | |
Cam01g0042 | 604 | SMART | PMEI_2 | 82 | 230 | IPR006501 | GO:0004857(InterPro) | |
Cam01g0042 | 604 | Pfam | Pectinesterase | 289 | 586 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
Cam01g0042 | 604 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 85 | 232 | IPR035513 | - | |
Cam01g0042 | 604 | FunFam | Pectinesterase | 283 | 601 | - | - | |
Cam01g0042 | 604 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 84 | 234 | IPR035513 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0042 | Cam-Chr1:793315 | Cam09g0554 | Cam-Chr9:5538356 | 9.10E-138 | dispersed | |
Cam10g0006 | Cam-Chr10:1694674 | Cam01g0042 | Cam-Chr1:793315 | 2.80E-121 | transposed | |
Cam01g0042 | Cam-Chr1:793315 | Cam05g1058 | Cam-Chr5:9663370 | 1.80E-210 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g0042 | - | - | - | 0.0 |