Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0042 ATGATCAACAACAACTACAACAAGCTTCACTCCTCCCGCTCCCTCGACTCTACTCCGGCCACCTCCTTCCACCTTTCCCCCAATGATCCTCCGCCACCTCCACCCTCCTCCTCCCTCCGCTACCGCTCTCGTATCCTTATCATCTCCTTCCTCTCCGTCCTCCTCATCGCTGCCTCCGTGGTCTCCGCCGCCGTGCTCGTCCGGTCCCATATCGCGTCGAGCCAACCCAATTTCCCTCACAACAAGCCCTCCCAAGCCATCTCCCGAGCCTGCAGCCACACTCTGTACCCATCTCTCTGCCTCTCTTCTCTTCTCTCCTTCCCCGGCTCTCTCTCCGCCGACGTCCATGACCTTGTTCACATCTCTCTCAACTTAACTCTTCAACATCTCACCAAAGCTCTTTATTCCACTTCTCAAATCCCCATCTCCCAAATCTCCAACGACCCTTTAGCCCATTCCGCTTATGAAGACTGCATGGAGCTTCTAAACGACGCCGTTGACGCTTTTTCCCTCTCTCTCTTTTCCACTGAAGCTTCTAATCACGACGTCATGACGTGGCTTAGTGCCGCATTGACTTATCATGACACGTGTACGGATGGATTTGCGGATGTGGCTGACTTGGCAGTTAAGGATCAGGTGGAGGCGAAGTTGAGCGATTTGTCGGAGATGATTAGTAATTCTTTGGCTATATTTTCTGGGTTTGGTGGTGGGGATTTGCCGGTGGAGAATAGGCGCCGCCGCCGGTTGATGGAGAGTGGTACACAGCCGTGGGCGGCGGAGAATGGTGGTGATGGGGGTTTTCCACAGTGGGTGAGTGGGAAGGATCGGAGGCTTTTGGCTACTCCTATTTCGGCGATTCAGGCGGATATTGTGGTGGCTAAGGATGGTTCTGGCAAATTCAAGACGGTGGCTGAGGCCATTGACGCGGCTCCGTCGTCGAGTGGCCGCCGGATTGTTATCTACATTAAGGCCGGAAAGTACGAAGAGGAGAATTTGAAGGTGGGAAGGAAGAAAACAAACTTGATGTTTGTGGGAGATGGAAAGGGCATAACGGTCATTTCAGGTGGAAAAAGTATCTTTGACAAAGTTACCACTTTTCGCACCGCCACCTTTGCGGGTTCGGGAACAGGAATAATTTTAAGAGACATGACGTTTGAGAACACAGCAGGAGCAAGCAAGCACCAAGCAGTGGCATTGCGCTTGAGCGCTGACCACGCTGTGGTATACCGTTGCAACATCATTGGTTATCAAGACACTCTCTATGTGCACTCAAACCGCCAATTCTTTCGAGAATGCGACATCTACGGTACGGTGGACTTCATCTTTGGGAATGCGGTAGTTGTGTTCCAAAGTTGCAACATCTATGCGCGAAAGCCAATGGCGGGGCAAAAGAACACCATCACTGCCCAAGACCGGAAGGACCCAAACCAAAACACTGGAATCTCCATCCATGCTTGTAAGATCATTGCCACTAGCGACCTCGAAGCCTCCAAGGGTTCTTTCCCCACCTACCTGGGTCGTCCTTGGAAATTATACTCTAGAGTGGTGTACATGGTATCTTCCATGGGCGACCATATTCACCCACGTGGTTGGCTGGAGTGGCAAGGTTCTTTTGCTCTCGACACTCTTTACTACGGCGAGTATATGAATTCTGGGCCAGGTGCCGCTGTTGGGCAGCGGGTCAAGTGGCCGGGTTATCGGGTCATAACTTCCACGGTAGAAGCCTCCAAATTTACTGTTGGACAATTCATTTATGGCTCTTCTTGGTTGCCCTCCACTGGAGTCTCCTTTTCAGCTGGATTATCCGCTAACTAA 1815 51.74 MINNNYNKLHSSRSLDSTPATSFHLSPNDPPPPPPSSSLRYRSRILIISFLSVLLIAASVVSAAVLVRSHIASSQPNFPHNKPSQAISRACSHTLYPSLCLSSLLSFPGSLSADVHDLVHISLNLTLQHLTKALYSTSQIPISQISNDPLAHSAYEDCMELLNDAVDAFSLSLFSTEASNHDVMTWLSAALTYHDTCTDGFADVADLAVKDQVEAKLSDLSEMISNSLAIFSGFGGGDLPVENRRRRRLMESGTQPWAAENGGDGGFPQWVSGKDRRLLATPISAIQADIVVAKDGSGKFKTVAEAIDAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSIFDKVTTFRTATFAGSGTGIILRDMTFENTAGASKHQAVALRLSADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMAGQKNTITAQDRKDPNQNTGISIHACKIIATSDLEASKGSFPTYLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEASKFTVGQFIYGSSWLPSTGVSFSAGLSAN 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 793315 798848 - CaPI482276_01g000420.1 Cam01g0042 117124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0042 604 Gene3D - 283 601 IPR012334 -
Cam01g0042 604 ProSitePatterns Pectinesterase signature 2. 434 443 IPR033131 -
Cam01g0042 604 Pfam Plant invertase/pectin methylesterase inhibitor 86 230 IPR006501 GO:0004857(InterPro)
Cam01g0042 604 NCBIfam pectinesterase inhibitor domain 60 232 IPR006501 GO:0004857(InterPro)
Cam01g0042 604 MobiDBLite consensus disorder prediction 1 24 - -
Cam01g0042 604 MobiDBLite consensus disorder prediction 1 37 - -
Cam01g0042 604 PANTHER PECTINESTERASE 44 592 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam01g0042 604 CDD PMEI-like_3 90 236 - -
Cam01g0042 604 SUPERFAMILY Pectin lyase-like 284 600 IPR011050 -
Cam01g0042 604 SMART PMEI_2 82 230 IPR006501 GO:0004857(InterPro)
Cam01g0042 604 Pfam Pectinesterase 289 586 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam01g0042 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 85 232 IPR035513 -
Cam01g0042 604 FunFam Pectinesterase 283 601 - -
Cam01g0042 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 84 234 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0042 Cam-Chr1:793315 Cam09g0554 Cam-Chr9:5538356 9.10E-138 dispersed
Cam10g0006 Cam-Chr10:1694674 Cam01g0042 Cam-Chr1:793315 2.80E-121 transposed
Cam01g0042 Cam-Chr1:793315 Cam05g1058 Cam-Chr5:9663370 1.80E-210 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0042 - - - 0.0