Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0049 ATGATAATTATCATGACTTATCTGCAGGAGAAGATTGTGAGGTTTCAGGACTGGAGTTCAGATAAAACTTCAAGGGGGTTATATTCTGCAGACAACACTTTAAATGCTGGAAAGATTGGGACAAGAGCTGACTTAGTTTCAGAGAAGCCTCACAAAGAATTGGAAACTGGTTCTTACAGGATTAATAGAATTAAGAAATCCTTGAAATCATCTTCTTTCAATAAATTTATGTCCAGAGGTCTTGGAACTGGAAAAAAAGTGCTTGACCCACAGGGTCCCTTTCTCCAGAAGTGGAATAAGATATTTGTGTTGTCTTGTGTGATTGCAGTCTCGTTGGATCCTTTGTTCTTTTATGTCCCAGTGATTGATGACGATAAGAAATGTCTTGGGTTGGATCAGAAGATGGAGATTACAGCTAGTGTGTTACGTTCATTCACTGATATATTTTATATATTACATATTGTTTTTCAATTTCGTACGGGATTTATCGCCCCCTCTTCTCGAGTATTTGGAAGAGGTGTTCTAGTTGAAGATGCTTGGGAAATAGCAAAGAGATATCTCTCATCATACTTTTTGATCGACATTCTTGCAGTCCTCCCACTTCCACAAGTAGTGATTCTGATAGTTATTCCAAACATGAAAGGCTCAAGGTCGTTGAATACCAAGGACTTGCTGAAATTTGTTGTTTTCTTCCAGTATGTGCCACGGTTTATCAGAATCTATCCATTATATAGAGAAGTTACAAGAACATCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTGGCAAGTCATGTCTTTGGAGCGTTCTGGTACTTGTTCTCTATAGAACGAGAAACTACATGTTGGCGGAGGGCTTGTCATAATCGTACTGGCTGTGTTTCTAATTCACTATATTGTGATGTCAGTCCAGGAGACAACTCATTTTTAAATATTTCATGTCCTCTAGTTGATGACAATCCTCCTTTTGATTTTGGAATATTTCTTGATGCTCTTGAATCTGGTGTTGTGGGGTCGATGAATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAAACAAGCATTTACGTGTGGGAAATTTGCTTTGCTGTTTTCATCTCCATTTCTGGCTTGGTTCTGTTTTCATTTCTCATCGGGAACATGCAGACATATTTGCAATCCACCACTACAAGATTGGAAGAAATGAGGGTTAGAAGGAGAGATGCAGAACAATGGATGTCCCACCGTTTGCTCCCTGAAAGCCTCCGAGAGCGAATCAGGAGGTATGAGCAGTACAAGTGGCAGGAAACCAGAGGTGTTGATGAAGAGAATCTGATTCGAAATCTTCCAAAAGATCTCAGAAGGGATATTAAACGCCATCTTTGCTTGTCTTTGCTAATGAGGGTACCCATGTTTGAAAAAATGGATGAACAATTGTTGGATGCAATGTGTGACCGTCTCAAGCCAGTACTATACACGGAGGAAAGTTTCATTGTTAGGGAAGGAGACCCGGTAGACGAGATGATTTTTATTATGCGAGGCAAGTTATTGTCTGTAACTACGAATGGGGGAAGAACTGGTTTCTTTAATTCTGAACACCTCAAGGCAGGTGATTTCTGTGGAGAAGAGTTACTGACATGGGCTCTGGATCCACACTCCTCATCCAATCTGCCAATTTCGACGAGAACTGTTCGAACACTTTCAGAAGTTGAAGCATTTGCTTTGAAGGCTGATGACTTAAAGTTTGTAGCCTCACAGTTCCGAAGGCTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCGCAGCAATGGAGAACATGGGCAGCATGTTTTATTCAAGCAGCATGGCGTCGATACCGCAGAAAGAAGCATGAGCAGACCCTCTTGGAAGAAGAGAACAGGTTAAAGGATGCATTGGCCAAGACAGGTGGGAGTTCTCCAAGTTTAGGTGCCACCATCTATGCATCCAGATTTGCAGCAAACATCCTTAGAACGATTCGACGGACAAGCTCACGGAAGGCCAGGATTCCAGAGAGAATACCACCGATGTTGCTTCAGAAACCAGCAGAACCTGATTTTACCTCTGAAGAGAATAGTTGA 2148 41.62 MIIIMTYLQEKIVRFQDWSSDKTSRGLYSADNTLNAGKIGTRADLVSEKPHKELETGSYRINRIKKSLKSSSFNKFMSRGLGTGKKVLDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVIDDDKKCLGLDQKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVEDAWEIAKRYLSSYFLIDILAVLPLPQVVILIVIPNMKGSRSLNTKDLLKFVVFFQYVPRFIRIYPLYREVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWRRACHNRTGCVSNSLYCDVSPGDNSFLNISCPLVDDNPPFDFGIFLDALESGVVGSMNFPQKFFYCFWWGLRNLSSLGQNLQTSIYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLIRNLPKDLRRDIKRHLCLSLLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESFIVREGDPVDEMIFIMRGKLLSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYRRKKHEQTLLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPMLLQKPAEPDFTSEENS 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 868856 875293 - CaPI482276_01g000490.1 Cam01g0049 117131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0049 715 Coils Coil 637 657 - -
Cam01g0049 715 ProSiteProfiles cAMP/cGMP binding motif profile. 485 569 IPR000595 -
Cam01g0049 715 Pfam Ion transport protein 100 412 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g0049 715 Gene3D Helix hairpin bin 411 476 - -
Cam01g0049 715 SUPERFAMILY Voltage-gated potassium channels 89 407 - -
Cam01g0049 715 Pfam Cyclic nucleotide-binding domain 506 597 IPR000595 -
Cam01g0049 715 FunFam Cyclic nucleotide-gated ion channel 1 483 601 - -
Cam01g0049 715 SUPERFAMILY cAMP-binding domain-like 414 607 IPR018490 -
Cam01g0049 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 703 - -
Cam01g0049 715 Gene3D Jelly Rolls 483 603 IPR014710 -
Cam01g0049 715 FunFam Cyclic nucleotide-gated ion channel 1 412 476 - -
Cam01g0049 715 CDD CAP_ED 485 616 IPR000595 -
Cam01g0049 715 Gene3D - 100 409 - -
Cam01g0049 715 SMART cnmp_10 485 616 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0049 Cam-Chr1:868856 Cam02g2195 Cam-Chr2:34701455 1.50E-187 dispersed
Cam02g1507 Cam-Chr2:28048768 Cam01g0049 Cam-Chr1:868856 1.30E-207 transposed
Cam04g1302 Cam-Chr4:26805586 Cam01g0049 Cam-Chr1:868856 4.60E-106 transposed
Cam10g1213 Cam-Chr10:25495479 Cam01g0049 Cam-Chr1:868856 2.90E-209 transposed
Cam01g0049 Cam-Chr1:868856 Cam05g0107 Cam-Chr5:1361155 1.10E-190 wgd
Cam01g0049 Cam-Chr1:868856 Cam05g1044 Cam-Chr5:9450486 3.30E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0049 K05391 - csv:101221781 1368.21