Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0060 ATGACACTAGCTCACTCTCATTCCCACCACAACCTAATGTGTCTTCAACCTTTAGCTGCCATCCTTGCCTCTTCATACATTACCATTCCCTCAACCTCTTTAACCTTCAATAGTAAACGTCGCATGCAGTTGGGGAGAAGGTTAGCTGAACTGAACACAGGCATTAGACCATTTCCCCAGGTTCCCAACTACCAGTTGAATATAATATTTTGGGTGAGATTACAAGGCTCAGCACTGCCTAAAACAATCAGAGTGGAGAAAGAAGGAAACATGGACAATCATCGTCACCAGAAACAAGCCAAAATCACTCCACTAGAATCTGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCATAAGCTGATTGGAGATAGGTGGGATCTGATAGCAGGCAGAATTCCGGGGCGTAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGA 519 43.16 MTLAHSHSHHNLMCLQPLAAILASSYITIPSTSLTFNSKRRMQLGRRLAELNTGIRPFPQVPNYQLNIIFWVRLQGSALPKTIRVEKEGNMDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 945702 948726 + CaPI482276_01g000600.1 Cam01g0060 117142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0060 172 Gene3D - 120 164 - -
Cam01g0060 172 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 102 162 IPR052141 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0030154(PANTHER)
Cam01g0060 172 SUPERFAMILY Homeodomain-like 121 160 IPR009057 -
Cam01g0060 172 SMART sant 116 164 IPR001005 -
Cam01g0060 172 Pfam Myb-like DNA-binding domain 120 160 IPR001005 -
Cam01g0060 172 CDD SANT 119 158 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0060 K09422 - - csv:101221077 171.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0060 Cam-Chr1:945702 Cam01g0200 Cam-Chr1:2312485 1.00E-17 dispersed
Cam01g0060 Cam-Chr1:945702 Cam02g0443 Cam-Chr2:5133045 3.90E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g869 . . . . . . . . . . Cma02g01101 Cma15g01040 . . . Cpe05g00615 . . . . . . . . Cla01g00061 Cam01g0060 Cec01g0061 Cco01g0061 Clacu01g0061 Cmu01g0061 Cre09g2447 . . . . . Csa05g00069 Chy09g01421 . . . . . . . . . . Cmo02g01127 Cmo15g01100 . . . . . Cpe13g00305 Bhi12g00613 . . Lac11g0135 Hepe06g0771 . Lcy12g0115 . . . . . . . Lsi09g00040 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002016 4 2 0 1 4 2 2 1 2 1 2 2 2 1 1 2 2 6 2 1 1 1 2 0 2 2 2 3 2 3 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51172 PF00249 Myb_DNA-binding 1.50E-06 CL0123 Cam TF