Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0065 ATGAGCTTCAAAAGGGACCTCAAGCTTGTCGTCTTCGTTTTCTTGGCAGTCTTCTGGTTTGCAGCGACTTTTTATCCGGTCATGTCAGAGCCAATCCAAGACAAGGAAGCTTTGCTTAATTTTATCAACAAGATGGATCACTCACACTCACTCAATTGGAAGAAGAGCACTTCTTTATGCAAAGAGTGGATGGGAGTTCAATGCAACAATGCTGGATCCCAAGTTGTAGCTCTGCGATTGGCTGAAGTTGGCTTACACGGTTCGATCCCAATCAACACTCTTGGTCGACTATCAGGACTTGAAACTCTAAGCCTAGGATCGAATTACATATCAGGGCCTTTCCCTTCTGACTTCCAAAAACTGAGAAATCTCAACTCACTCTACTTAGAAAACAACAAGTTTTCTGGTCCATTGCCATTGGATTTCTCAGTATGGAAGAATCTCAACATCATTGATTTGTCCAACAATGCCTTCAATGGGTGCATCCCTAGCTCAATTTCAAACACAACACATTTAACGACATTAAACCTTGCCAATAACTCACTCTCTGGTAAGATTCCAGACCTCCACCTTCCTAATTTGCAGGAGTTGGATCTTTCAAACAACCATCTCACAGGGAATGTCCCTCAGTCCCTTCAAAGATTTCCGAGTCGGGCATTCTCTGGTAACAACCTCATCCCTGGAAATGCCATTCCTCCAGTTCGTCCTGGACAATCGCCCAATGCTCAACCATCAAAGAAAAGTACAACAACAATTGGTGAAGCAGCAATTTTAGGCATTATAATTGGAGGTTCTGCAATGGGGCTAGTTATAGCAGTCATTTTGATGGTTATGTGCTGCTCAAACAGAGGAGTAAAAAACAAGGCATCATCAAAACTGGACAAACAAGATCTGTTTGTAAAGAAAAGGGGATCTGATACACAAAGCAACAACCTCAAGTTCTTTCAGAGTCAGAGCCTTGAGTTTGACTTGGAGGACTTGTTGAGGGCATCTTCTGAGGTGCTTGGGAAGGGGACGTCCGGGACGACGTATAAGGCGACTTTAGAAGATGGTAATGCCGTGGCAGTGAAGAGGTTGAAGGAAGTGAGTGTTTCAAAGAAAGAATTTGAGCAGCAAATGGATGTGCTTGGGAGCATTGAACATGAAAATGTGTGTGGTTTAAGGGCTTATTATTATTCAAAGGATGAGAAACTCATGGTCTTTGACTTTTACCAACATGGAAGTGTCTCAGCAATGTTGCATGTTGCGAGAGAGAAAGGGCAATCTCCTCTAGACTGGGAAACTCGACTCCGAATCGCCATTGGCGCCGCCAGAGGAATCGCTCGCATTCACTCAGAAAACTGCGGCAAACTCCTTGTCCATGGAAACATCAAGGCCTCAAACGTCTTCCTCAACTCCGACGGCTACGGTTGCGTCGCAGACGCCGGCGTCGCTGCTCTGATGAACCTCATGGTCCCGCCAGCCACCAGATCCGCTGGATACCGTGCTCCCGAACTCAAGGACTCTCGCAAAGCATCTCAAGCCTCTGATACTTACAGCTTCGGCGTCGTGCTTCTCGAGCTCCTCACCGGAAAATTTCCACTGCATACGAAGGGAGGCAACAGCGGAGGCGGCGGCGATCAGATTATCCACCTAGTGCGTTGGGTGAACGCGGTGGTCCGCGAGGAGTGGACGGCAGAGGTGTTTGATGTGGAGCTTTTGAGGTATCCGAACATAGAGGAGGAGATGTTAGAGACGCTGCAGATTGCGCTATCTTGTGTAGGAAGGGTTCCGGATGATCGGCCGGCAATGGCGGATGTTGCGGCTCGTTTGGAGGGAGTTCGTCGGGTGAGCGGCGTAGGAAGCCTACCACCGCCGCCGCCGCCGTTGGAACGTGGAGCGGGGGATTTGGTTCAGATTCAGGTGAATGCGGCTGAGGGTGACGGTGACGGTGGAGCTCCGTCGAGATCGAATTGA 1956 48.36 MSFKRDLKLVVFVFLAVFWFAATFYPVMSEPIQDKEALLNFINKMDHSHSLNWKKSTSLCKEWMGVQCNNAGSQVVALRLAEVGLHGSIPINTLGRLSGLETLSLGSNYISGPFPSDFQKLRNLNSLYLENNKFSGPLPLDFSVWKNLNIIDLSNNAFNGCIPSSISNTTHLTTLNLANNSLSGKIPDLHLPNLQELDLSNNHLTGNVPQSLQRFPSRAFSGNNLIPGNAIPPVRPGQSPNAQPSKKSTTTIGEAAILGIIIGGSAMGLVIAVILMVMCCSNRGVKNKASSKLDKQDLFVKKRGSDTQSNNLKFFQSQSLEFDLEDLLRASSEVLGKGTSGTTYKATLEDGNAVAVKRLKEVSVSKKEFEQQMDVLGSIEHENVCGLRAYYYSKDEKLMVFDFYQHGSVSAMLHVAREKGQSPLDWETRLRIAIGAARGIARIHSENCGKLLVHGNIKASNVFLNSDGYGCVADAGVAALMNLMVPPATRSAGYRAPELKDSRKASQASDTYSFGVVLLELLTGKFPLHTKGGNSGGGGDQIIHLVRWVNAVVREEWTAEVFDVELLRYPNIEEEMLETLQIALSCVGRVPDDRPAMADVAARLEGVRRVSGVGSLPPPPPPLERGAGDLVQIQVNAAEGDGDGGAPSRSN 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 985272 987669 - CaPI482276_01g000650.1 Cam01g0065 117147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0065 651 Gene3D Ribonuclease Inhibitor 32 189 IPR032675 -
Cam01g0065 651 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Cam01g0065 651 FunFam pollen receptor-like kinase 1 299 403 - -
Cam01g0065 651 PANTHER OS05G0588300 PROTEIN 11 614 IPR050994 -
Cam01g0065 651 ProSiteProfiles Protein kinase domain profile. 329 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g0065 651 FunFam Probable inactive receptor kinase RLK902 31 190 - -
Cam01g0065 651 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 404 614 - -
Cam01g0065 651 Gene3D Transferase(Phosphotransferase) domain 1 405 612 - -
Cam01g0065 651 SUPERFAMILY L domain-like 41 215 - -
Cam01g0065 651 Pfam Leucine Rich repeats (2 copies) 170 205 IPR025875 -
Cam01g0065 651 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524(InterPro)
Cam01g0065 651 PRINTS Leucine-rich repeat signature 172 185 - -
Cam01g0065 651 PRINTS Leucine-rich repeat signature 191 204 - -
Cam01g0065 651 Gene3D Phosphorylase Kinase; domain 1 295 403 - -
Cam01g0065 651 MobiDBLite consensus disorder prediction 226 248 - -
Cam01g0065 651 ProSiteProfiles Leucine-rich repeat profile. 171 192 IPR001611 GO:0005515(InterPro)
Cam01g0065 651 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Cam01g0065 651 Pfam Leucine rich repeat 88 134 IPR001611 GO:0005515(InterPro)
Cam01g0065 651 Pfam Protein kinase domain 332 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g0065 651 SUPERFAMILY Protein kinase-like (PK-like) 333 623 IPR011009 -
Cam01g0065 651 Gene3D Ribonuclease Inhibitor 190 232 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0065 Cam-Chr1:985272 Cam01g0211 Cam-Chr1:2408086 3.40E-154 dispersed
Cam01g0065 Cam-Chr1:985272 Cam05g1028 Cam-Chr5:9281237 1.70E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84844 PF00069 Pkinase 1.50E-30 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0065 - - - 0.0