Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0070 ATGGAGCAAGACAGTGAAGAAGAGGTAAAGACGTTTCAGAGCTTAGGGATATGTGAGCAATTGGTGGAGGCATGCGAGAGTTTAGGCTGGAAAAATCCATCAAAGATTCAGGCGGAGGCTATTCCTCATGCCCTAGAAGGAAAGGATCTAATTGGACTTGCACAAACTGGTTCTGGGAAAACTGGAGCTTTTGCTCTTCCCATTTTGCAAGCTCTCTTGGAAGCTCCTCAAGCATTTTTTGCCTGTGTGCTCTCTCCCACAAGGGAGCTTGCAATTCAGATAGCTGAGCAGTTTGAAGCTTTAGGGTCTGGCATTGGTATTAAGTGTGCAGTGCTTGTCGGAGGGGTAGACATGGTGCAGCAAGCCATTAACCTGGCAAAACGGCCACATATTGTTGTTGGGACACCTGGACGCCTTGTGGACCATCTAACCAATACGAAAGGTTTTTCTCTGCGCACGTTGAAGTATCTGGTTCTTGATGAGGCAGATAGGTTACTGAATGAAGACTTTGAAAAATCAATTGATGAAATTCTGAATGAAATTCCTCGTGAGAGGAGAACATATCTATTTTCTGCTACTATGACGAAAAAGGTTCGGAAACTTCAAAGGGCATGCTTAAGGAATCCTGTTAAGATTGAAGCGGCAACCAAATATTCCACAGTAGACACACTAAAGCAGCAATATTGTTTTATCCCTGCGAAGTATAAGGAGTGTTATCTTGTCTATATCTTAACTGAGATGTCTGGTTCAACATCAATGGTCTTCACTCGCACTTGTGACGCCACTCGCCTTCTATCATTGATTCTTCGAAATCTTGGATTAAGAGCCATACCCATTAGTGGTCAGATGACCCAGGCAAAGAGACTAGGAGCCTTAAATAAGTTCAAGGCTGGAGAATGCAATGTTCTCATCTGTACTGATGTGGCTAGCAGAGGACTTGATATTCCATCTGTGGATATGGTCATCAATTATGATATTCCTTCAAATTCCAAGGATTACATACATAGAGTTGGAAGAACTGCTCGTGCAGGTCGTTCTGGGGTTGCCATCTCCTTGGTTAATCAGTATGAGTTAGAGTGGTATATACAGATAGAGAAGCTCATAGGGAAAAAATTACCGCAGTTTTCCGCTCAAGAAGAGGAAGTTTTGATGCTGTTAGAGCGTGTGACAGAGGCAAAGAGAATATCTCTCATGAAAATTAAAGAAGCTGGTGGTAAAAAGAGGAGGCGAGGTGGAGATGACGACGATGACAACGACAATAACGATGTTGAAAAGTATTTGCGTCTCAAGACTGGAAAGGGTGGAAAAATGTCCAAGAATGGAAAAACATCCAAGAAGTTGAAAAGAAGATGA 1353 42.72 MEQDSEEEVKTFQSLGICEQLVEACESLGWKNPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALLEAPQAFFACVLSPTRELAIQIAEQFEALGSGIGIKCAVLVGGVDMVQQAINLAKRPHIVVGTPGRLVDHLTNTKGFSLRTLKYLVLDEADRLLNEDFEKSIDEILNEIPRERRTYLFSATMTKKVRKLQRACLRNPVKIEAATKYSTVDTLKQQYCFIPAKYKECYLVYILTEMSGSTSMVFTRTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALNKFKAGECNVLICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEEVLMLLERVTEAKRISLMKIKEAGGKKRRRGGDDDDDNDNNDVEKYLRLKTGKGGKMSKNGKTSKKLKRR 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1011505 1018024 + CaPI482276_01g000700.1 Cam01g0070 117152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0070 450 MobiDBLite consensus disorder prediction 403 450 - -
Cam01g0070 450 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 383 IPR001650 -
Cam01g0070 450 Pfam Helicase conserved C-terminal domain 239 344 IPR001650 -
Cam01g0070 450 SMART helicmild6 263 344 IPR001650 -
Cam01g0070 450 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 10 38 IPR014014 GO:0003724(InterPro)
Cam01g0070 450 CDD DEADc_DDX47 11 213 IPR044765 GO:0005524(InterPro)
Cam01g0070 450 MobiDBLite consensus disorder prediction 403 431 - -
Cam01g0070 450 Pfam DEAD/DEAH box helicase 35 200 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cam01g0070 450 SMART ultradead3 29 227 IPR014001 -
Cam01g0070 450 Gene3D - 1 215 IPR027417 -
Cam01g0070 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 365 IPR027417 -
Cam01g0070 450 CDD SF2_C_DEAD 224 353 - -
Cam01g0070 450 Gene3D - 218 390 IPR027417 -
Cam01g0070 450 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 158 166 IPR000629 -
Cam01g0070 450 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 4 440 IPR050079 -
Cam01g0070 450 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 212 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0070 K14777 - - csv:101219259 833.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0070 Cam-Chr1:1011505 Cam02g1933 Cam-Chr2:32441153 7.60E-97 dispersed
Cam01g0070 Cam-Chr1:1011505 Cam06g1881 Cam-Chr6:29867140 7.50E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g348 . . . . . . . . Cmo06g01115 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00080 Chy09g01411 . . . . . . . . . . . . Cma06g01089 . Car06g00924 . Cpe08g00529 . . . . . . . . Cla01g00071 Cam01g0070 Cec01g0071 Cco01g0071 Clacu01g0071 Cmu01g0072 Cre09g2437 Lsi09g00051 . . Cme09g01955
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005266 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 2 1 1 2 40