Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0082 ATGGAACAGAAGCACATTTTTCTATCTGCTTTGGGTGTTGGGGTTGGAGTTGGGGTAGGCCTTGGATTGAGCTCTGGACAAGCTGTTGGGAAATGGGTTGGAGGGAATGGCTCTTCTGATGAGATTACAGGGCAAAAGATTGAACAGGAGCTGATCAGGCAGCTGCTTGATGGCCAAAACAGCAATGTAACTTTTGATGAGTTTCCTTATTATCTAAGCGAAAGGACGCGGGTGCTTTTGATGAGTGCTGCATATGTTCATTTGAAGCACTGTGACATCTCCAAGCACACCAGAAATCTTTCACCAGCAAGTCGGGCTATTTTGCTTTCAGGACCAACAGAACTTTACCAGCAGATGCTTGCCAAGGCTCTGGCGCATCACTTTGAGTCAAAGTTGCTGTTGTTAGACGTTTCTGACTTTTCTTTAAAGATGCAGAGCAAATATGGTTGTCCCAAGAAAGAATCTTCATTCAGGAGGTCGATCTCTGAGGTAACATTTGAGCGAATGTCTAGCGTTTGGGGTTCCTTCTCGATTCTTCCTACGAGTGGAAATACTAGGGGAAACCTAAGAAGGCAAAGCAGTACTACTGACATTCAATCGAGATGCACCGATGGCTCGTCTAATCTTCCAAAACTTCGGAGAAATGCTTCCGCTGCATCTGATATCAGTAGTATCTCATCAAACTATGCTTCAACAAACCCAGCTTGTGCCAAGCGCACAAATAGTTGGTGTTTTGATGAGAAACTTTTTCTTCAGTCACTTTATAAGGTCATGGTGTCGGTATCCGAAACTAGTTCCATAATTTTGTATCTGAGAGATGTTGAGAGACTTCTTCTTCAGTCACAAAGGATGTACAATCTGTTCAATAGATTTCTAAACAAGCTCTCGGGATCAGTTTTAGTACTTGGTTCTCGAATGGTAGATGTGGAAAATGATTGCGGAGATGTTGACGACAGACTGACCAATTTATTCCGGTATAGTGTTGAAGTTCGACCCCCTGAAGATGAGAACCATCTTGTCAGCTGGAAAGCTCAATTGGAAGAGGACATGAAGATGATTCAGTTCCAAGATAATAAAAACCACATCACTGAAGTACTTGCTGCAAATGATCTTGAATGTGATGATCTTGGTTCAATCTGCCATGCAGACACCATGGTTCTCAGTAATTATATTGAAGAAATTGTCGTGTCAGCAATATCCTATCATCTGATGAACAACAGGGATCCAGAATACCGAAATGGAAAACTTCTGATATCTTCTAAGAGTTTATCCCATGGATTGAGTATATTCCAGGAAGGAAATAATGAAGGAAAAGACACTCTAAAGTTAGAGACGAATGCAGAATCATCGAAGGAACCCCAAAGGGACGAAGCTGTTGGGGCGAAGACTGAATCTAAATCTGAAAATCCAGCCGCAGAAAACAGAAGTGAGGCGGAGAAATCTGTTCCTATAGTGAAAAAGGATGTTGAAAATGTGCCTCCACAAAAAGCACCTGAAATTCCTCCTGATAACGAATTTGAAAAGCGTATAAGACCTGAAGTTATCCCTGCAAATGAAATTGGGGTGACATTTGCAGACATTGGTGCTATGGATGATATCAAAGAGTCCTTACAGGAATTAGTCATGCTTCCTCTTCGACGACCAGACCTCTTTAAAGGCGGGCTTCTTAAACCTTGTAGGGGTATTCTGCTTTTCGGCCCTCCTGGAACGGGTAAAACAATGCTAGCAAAGGCCATTGCTAATGAAGCCGGAGCAAGTTTCATCAATGTTTCAATGTCCACAATCACTTCTAAATGGTTTGGGGAAGATGAAAAGAATGTTCGTGCATTGTTTACACTCGCAGCAAAAGTCTCACCTACAATTATTTTTGTGGATGAAGTCGATAGCATGCTCGGCCAGAGAACTAGAGTGGGAGAGCACGAGGCCATGCGGAAGATTAAAAATGAATTCATGTCACACTGGGATGGACTGCTGACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATCATTCGGCGATTTGAACGCAGAATTATGGTTGGTCTTCCATCAGTGGAGAGCAGGGAATTGATATTAAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGAATTTGTGTGTGACTGCGGCGTATCGGCCTGTTCGAGAGCTCTTGCAACAAGAGAGATTGAAGGATTTGGAAAAGAAGCAGAGAGAGACAAAGGAAAAGGAGAAGCAGAAGCAGGAGGAGGAGGAGAAAGAAAATGAGAAGGAGAAGCAGGAGAAGGAGAAGGAGACGGAGATGGAGACCGAGAAGGAGAAGAAGAAGGAAAATAACTCAGAAGAAGTTACAGGTACCAAAGAGGCGGAAAAAGAGGAACAAGTGATCATTCTGAGGCCTTTAAATATGGATGATATGAGGCAGGCCAAAAATCAGGTTGCTGCAAGTTTTGCTTCTGAGGGATCAGTTATGAATGAGTTGAAGCAATGGAATGATTTGTATGGAGAGGGAGGTTCAAGAAAAAAGCAACAACTTACATATTTCTTATAG 2619 42.57 MEQKHIFLSALGVGVGVGVGLGLSSGQAVGKWVGGNGSSDEITGQKIEQELIRQLLDGQNSNVTFDEFPYYLSERTRVLLMSAAYVHLKHCDISKHTRNLSPASRAILLSGPTELYQQMLAKALAHHFESKLLLLDVSDFSLKMQSKYGCPKKESSFRRSISEVTFERMSSVWGSFSILPTSGNTRGNLRRQSSTTDIQSRCTDGSSNLPKLRRNASAASDISSISSNYASTNPACAKRTNSWCFDEKLFLQSLYKVMVSVSETSSIILYLRDVERLLLQSQRMYNLFNRFLNKLSGSVLVLGSRMVDVENDCGDVDDRLTNLFRYSVEVRPPEDENHLVSWKAQLEEDMKMIQFQDNKNHITEVLAANDLECDDLGSICHADTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSLSHGLSIFQEGNNEGKDTLKLETNAESSKEPQRDEAVGAKTESKSENPAAENRSEAEKSVPIVKKDVENVPPQKAPEIPPDNEFEKRIRPEVIPANEIGVTFADIGAMDDIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESRELILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLEKKQRETKEKEKQKQEEEEKENEKEKQEKEKETEMETEKEKKKENNSEEVTGTKEAEKEEQVIILRPLNMDDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1130530 1136910 + CaPI482276_01g000820.1 Cam01g0082 117164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0082 872 MobiDBLite consensus disorder prediction 759 817 - -
Cam01g0082 872 MobiDBLite consensus disorder prediction 445 503 - -
Cam01g0082 872 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 38 871 IPR051701 GO:0005741(PANTHER)
Cam01g0082 872 MobiDBLite consensus disorder prediction 445 486 - -
Cam01g0082 872 Coils Coil 753 804 - -
Cam01g0082 872 Gene3D - 521 693 IPR027417 -
Cam01g0082 872 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam01g0082 872 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 521 696 - -
Cam01g0082 872 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam01g0082 872 MobiDBLite consensus disorder prediction 184 214 - -
Cam01g0082 872 Pfam AAA+ lid domain 714 758 IPR041569 -
Cam01g0082 872 Gene3D - 694 777 - -
Cam01g0082 872 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 762 IPR027417 -
Cam01g0082 872 SMART AAA_5 558 695 IPR003593 GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0082 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0082 Cam-Chr1:1130530 Cam03g0367 Cam-Chr3:4798803 2.50E-144 dispersed
Cam01g0082 Cam-Chr1:1130530 Cam07g0790 Cam-Chr7:19800412 1.40E-304 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75