Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0103 ATGGTTGTTGATTCAACCATTTTAGAATCTCGAATCTCTAACTCGATTCACTTGACTCATCGTTGTTGTTTGAGTTCAAACTCAAAATCGACCCTACAATGTACTATGCTCTATTTTCCAGCGTCGAAGGCCCACACCACGCCACGACCCCCCAGCCCACAAGATACCGGCGAAGTCAAGTCTGATGGGGTTGCTTTGTCTTCCATCCGAAACCCTAACTACCATCACGTGCGGCGGCCAGCTTCCTTGATAGAGTTTGTTCGTTTGTTGGCATGTAGCTGCAGTAGGCACATTTTGCCGTTTTCTCTTAATTGGAATCTGGGCAACGGAAAATTTTCGATTCCTGGACTTTTGTTGTACGTACCATGCTTTATGAAATATGACGCAATATTGAGAATTTCTGGAATGTCTCCCAGTGTTGTGGCTGAAGTGTGTGATTGCGTGCTCCTTGGAAGGTCTTTACTGTTGAGCGTAGTGATTGCATGCTCCTTGGAAGGTCTACCCTGTTCATTTACCTACTGTGCCACTGGTCAGAGTGGTGGATATATTGTTTTCATATCTTTTCCAATAATTCTTGCTTTTATTTCTTTTGATCTCAGCAAAGTGCTACATCAGATGACTGAAAGTGCTATGGCGGTAGTCAAACCTGAGATGAAGTCTTACATTTGGCTTCAAACTGCTGACGGCTCAATACAACAAGTTGAAGAAGAGGTTGCTATGTTTTGCCCAATGATTTGTCGGGAAATACTACAAACAGGGATGGGATCCTCCAAAAATTATGCAATATCTCTTCCACAGCGAGTGAATCCTGCTATTTTAGGTTTAATTCTTGACTATTGCAGGTTTCATCAAGTACCAGGTCGCTCCAATAAGGAGCGTAAAACATTTGATGAGAAATTCATTCGCATGGATACAAAAAAGCTGTGTGAGTTGACATCTGCTGCTGACAGCCTCCAATTGAAACCTTTGGTTGATCTAACTAGTCGAGCACTTGCACGAATTATTGAAGGAAAGACTCCAGAGGAGATAAGGGAGACATTCCATCTACCTGATGATCTCACGGAGGAGGAAAAGCTGGAGCCCTTACGAAACATAACAGATGATCCGCGCATTCGGCTCTTAAATAGATTATATGCACGGAAGAGGAAAGAATTAAGAGAAAGAGAGAAGTTGAAGAATGTTGAGATTGAGGAGCGGGTGGATGATAGATCAGTCGATGACCTTTTGTCTTTTATAAATGGAGGAGATGGAGATTCAAAGGCAGTTAAAACAAACAAAAACAAAAAGAAAAATCGGAGGAGAAAAGATCAACAGAAGGATTCTTCTTCAACCAATGAAAACGGGAACCATGATAAAATAGGGGAGTTGGATGCTCTTCCTTGTTGCCAGAATAATGAGTTTAACAAGATTTTGGCGGCATCTCCGAGTAGAACTGTGAAATCACAGGATTCGGCAGCTGCCATGTATTCATCTAAGATTGACTTTGATGATGCTGATATATATGATGATCTAGATCCTGCGATGAAAGAGGAACTTGACAGGGAAGTAGAAGACTTCGCTAGAAGATTGAATTCAGATTGGCCGGAAAGAGTGCAAGAAATTTTATCACTAGGCCAAGAACGAAAACTGGTGACAGTGTTAACTGGCAATGGTTCATCACCCAGATTCACAACTCAGTCGATTCAAACGAGCCAGATTACGGGAGAAGCTACTGTTGGAAACTTGGAAGGAAGCAAGAGTTTGCAGGATTTCAGTCCTGGGACCCCTAAAATTTGTATGCAAGATGAGCCTACAGGAGTGCCAATCAACCGAGCCACCAGGTTTGAGAATAAGGTAGGATCCCTGCAGCCCCTATTCGCCTATTCTCGGGTCGTGAGTGTGGGTTCCTACTAG 1893 42.89 MVVDSTILESRISNSIHLTHRCCLSSNSKSTLQCTMLYFPASKAHTTPRPPSPQDTGEVKSDGVALSSIRNPNYHHVRRPASLIEFVRLLACSCSRHILPFSLNWNLGNGKFSIPGLLLYVPCFMKYDAILRISGMSPSVVAEVCDCVLLGRSLLLSVVIACSLEGLPCSFTYCATGQSGGYIVFISFPIILAFISFDLSKVLHQMTESAMAVVKPEMKSYIWLQTADGSIQQVEEEVAMFCPMICREILQTGMGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGRSNKERKTFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYARKRKELREREKLKNVEIEERVDDRSVDDLLSFINGGDGDSKAVKTNKNKKKNRRRKDQQKDSSSTNENGNHDKIGELDALPCCQNNEFNKILAASPSRTVKSQDSAAAMYSSKIDFDDADIYDDLDPAMKEELDREVEDFARRLNSDWPERVQEILSLGQERKLVTVLTGNGSSPRFTTQSIQTSQITGEATVGNLEGSKSLQDFSPGTPKICMQDEPTGVPINRATRFENKVGSLQPLFAYSRVVSVGSY 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1335570 1345857 - CaPI482276_01g001030.1 Cam01g0103 117185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0103 630 SUPERFAMILY Skp1 dimerisation domain-like 295 362 IPR036296 GO:0006511(InterPro)
Cam01g0103 630 MobiDBLite consensus disorder prediction 416 456 - -
Cam01g0103 630 SUPERFAMILY POZ domain 220 284 IPR011333 -
Cam01g0103 630 Coils Coil 374 394 - -
Cam01g0103 630 SMART skp1_3 219 320 IPR001232 GO:0006511(InterPro)
Cam01g0103 630 Pfam Skp1 family, dimerisation domain 321 358 IPR016072 GO:0006511(InterPro)
Cam01g0103 630 FunFam SKP1-like protein 21 isoform X1 216 366 - -
Cam01g0103 630 PANTHER SKP1 218 360 IPR016897 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006511(InterPro)|GO:0031146(PANTHER)|GO:0097602(PANTHER)
Cam01g0103 630 Pfam Skp1 family, tetramerisation domain 222 284 IPR016073 GO:0006511(InterPro)
Cam01g0103 630 Gene3D Potassium Channel Kv1.1; Chain A 215 365 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0103 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0103 Cam-Chr1:1335570 Cam11g0698 Cam-Chr11:8596909 7.10E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g669 . . Bda05g00074 . . . . Bma14g02085 . . . . . . . . Cpe14g00108 . . . . . . . Cla01g00104 Cam01g0103 . Cco01g0105 Clacu01g0101 . Cre09g2404 . . . . . Csa05g00297 Chy09g01209 Cme06g01000 . Blo09g00110 . . . . . . . . . Cma16g00128 . . . Cpe09g00091 . . . . . . . . Cla05g00882 Cam05g0969 Cec05g0973 Cco05g0973 Clacu05g0956 Cmu05g0913 Cre05g0997 . Csa03g01711 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003335 2 5 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 7 3 2 49