Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0115 ATGCAGGAGCCAATGTCGCAATTCGATTGCATACACGTGGACGCCCCAAAACGGAGCCAAACTCTTGATGCCTCTCTCACTCGAAAGGTGGGAGCAGAATTTGTGGGCACATTCATTCTCATATTTGCTGCAACAGCCGCACCCATCGTCAACCAAAAGTACAACTCCGTCATGTCACTTATCGGAAACGCTGCATGCGGCGGCCTAGCGGCAATGGTCGTAATTCTGTCCACGGGACACATATCTGGCGGCCACCTAAACCCGTCACTAACCATCGCCTTGGCCGCCGTCCGCCACTTCCGTTGGGCCCATGTCCCCGCCTACATCATCGCCCAGGTCTCCGCTTCCATCTGCGCCTCCTTCGCTCTTAAAGGCGTTTTTCACCCTTTTATGTCTGGCGGCGTCACCGTCCCCTCCGTTGGCACTGCCCAGGCCTTTGCTCTCGAATTCCTCATCACTTTCAATCTCTTGTTCGTCGTCACCGCTCTCTCTACTGATACTCTAGCCGTTGGAGAGTTGGGCGGAATTGCAGTTGGAGCAACGGTGGTGCTCAACATTCTTATCGCTGGGCCATCCACCGGTGGTTCGATGAACCCAGTGAGGACTCTAGGCCCCGCCGTGGCTGCCGGAAATTATAAAGAACTGTGGGTGTACATGGTGGCTCCTACACTTGGGGCGATCGTTGGCGCTGGAACCTACACCGCCGTGAAGCACAAAGATGATGAAATGGATCATGTTCCGCCGCATGTGAGGAGCTTCCGTCGATGA 768 55.21 MQEPMSQFDCIHVDAPKRSQTLDASLTRKVGAEFVGTFILIFAATAAPIVNQKYNSVMSLIGNAACGGLAAMVVILSTGHISGGHLNPSLTIALAAVRHFRWAHVPAYIIAQVSASICASFALKGVFHPFMSGGVTVPSVGTAQAFALEFLITFNLLFVVTALSTDTLAVGELGGIAVGATVVLNILIAGPSTGGSMNPVRTLGPAVAAGNYKELWVYMVAPTLGAIVGAGTYTAVKHKDDEMDHVPPHVRSFRR 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1427671 1431762 + CaPI482276_01g001150.1 Cam01g0115 117197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0115 255 Gene3D Glycerol uptake facilitator protein. 5 245 IPR023271 -
Cam01g0115 255 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g0115 255 PRINTS Major intrinsic protein family signature 28 47 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g0115 255 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g0115 255 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g0115 255 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g0115 255 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g0115 255 PANTHER AQUAPORIN NIP2-1 20 240 IPR034294 -
Cam01g0115 255 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Cam01g0115 255 Pfam Major intrinsic protein 25 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g0115 255 FunFam Aquaporin NIP2-1 18 247 - -
Cam01g0115 255 SUPERFAMILY Aquaporin-like 24 242 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0115 Cam-Chr1:1427671 Cam07g1350 Cam-Chr7:27852853 2.40E-79 dispersed
Cam01g0114 Cam-Chr1:1420264 Cam01g0115 Cam-Chr1:1427671 2.70E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0115 K09874 - csv:101212485 422.935