Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0116 ATGGGTTTGCTCAAATTCTTTAGAGTTAAGAGAAAATCCAAAGTTGCTGATAAAAAAACCGTTCTTGATGCTCAATTTGAAGAGGGTTTTTTCGCTACAAGGTTTCGCTGGACTGAGATCGAGGCTTTCACTAAGAATTTCTCCGCTCTTGTCGGCTCCGGCGGCTTCAGCAACGTTTATCTTGCTCGGACGGCGCCGGGGATGGCGGCCGCTGTCAAGATTTTGGGCGCTAGTGAGCGGCTCAACCGGATGTTCCGCCAGGAATTGGACATTCTTCTCCAGCTCCGTCACCGGAATATTGTCAATTTCGTTGGGTATTGCGATGAACGAGATGAAGGAGCCTTGGTATTCGAATATGTCCCAAATGGAAACTTACAAGAGAAGCTCCACAGCCGGGCGGCGGCCACGAAGACGGCGGTTCTTCCATGGAAACTCCGGCTACTCATAGCCTTTCAATTAGCTCAAGCAATCGAATACCTCCATGAGAAATGCAGCTTACAAATCGTTCACGGCGATATAAAATCATCGAACATTTTACTGGACGAACGATTCAATTGCAAATTATGCGATTTCGGGTCAGCAAAAATGGGATTTTCGTCGTCGGTGGGGAATCCATCCTCGTCGCCGTCGCCGTCGAGCCCCTTCAGAGCGAAGCAATTGATGATGGGATCTCCAGGATACACAGATCCCCAATATCTAAGAACCGGAATCGCTTCAAAGAAAAACGATATTTACAGTTTCGGCGTTGTTCTCTTAGAGCTGATCACCGGAAAAGAGGCTTTCTGTTCAGAGAAAGGTCAGATTCTGACATCAATTTTACCTCCGGCGGTTCGCGACGGCGGAGGAATTAAACCGTCGGAAGTGGCGGAACTAGTCGATCCGCGACTCCGGGGCGATTACGACGGCAATGAAGCCGGTGCGTTGATTTCAATTGCGGCGGCGTGCGTGACGCAACCGCCGGCGCCGAGGCCGACGATCGGAGGCGTGCTGCAGATGATGACGGAGAAGATCGGAAATGTTGGCGACGGGGTATGGGCGGTGAAACGTGGCAGTAAATCATTGGATGTGGGGAGATGGTAA 1080 50.56 MGLLKFFRVKRKSKVADKKTVLDAQFEEGFFATRFRWTEIEAFTKNFSALVGSGGFSNVYLARTAPGMAAAVKILGASERLNRMFRQELDILLQLRHRNIVNFVGYCDERDEGALVFEYVPNGNLQEKLHSRAAATKTAVLPWKLRLLIAFQLAQAIEYLHEKCSLQIVHGDIKSSNILLDERFNCKLCDFGSAKMGFSSSVGNPSSSPSPSSPFRAKQLMMGSPGYTDPQYLRTGIASKKNDIYSFGVVLLELITGKEAFCSEKGQILTSILPPAVRDGGGIKPSEVAELVDPRLRGDYDGNEAGALISIAAACVTQPPAPRPTIGGVLQMMTEKIGNVGDGVWAVKRGSKSLDVGRW 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1433136 1434572 - CaPI482276_01g001160.1 Cam01g0116 117198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0116 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g0116 359 PANTHER OS01G0253100 PROTEIN 19 335 - GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cam01g0116 359 SUPERFAMILY Protein kinase-like (PK-like) 30 333 IPR011009 -
Cam01g0116 359 Gene3D Phosphorylase Kinase; domain 1 7 119 - -
Cam01g0116 359 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524(InterPro)
Cam01g0116 359 Gene3D Transferase(Phosphotransferase) domain 1 120 341 - -
Cam01g0116 359 ProSiteProfiles Protein kinase domain profile. 45 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g0116 359 Pfam Protein kinase domain 49 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g0116 359 SMART serkin_6 45 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0116 Cam-Chr1:1433136 Cam05g1172 Cam-Chr5:10969562 3.70E-46 dispersed
Cam01g0116 Cam-Chr1:1433136 Cam05g2521 Cam-Chr5:33057827 3.00E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84845 PF00069 Pkinase 9.10E-41 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0116 - - - 0.0