Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0118 ATGGAAGAAGCTGCAGGTGGATCCGGATCAGGATTACCTGATCCATCTCAATTATTCGGAGTTTCCACACCGCCGCCGCCTTTAACCGTCGATGCCGCCATGAGTGATTCTCAGCAAGTCGAAGCTGCTTCTCCGATTAGTAGCCGACCTCCAGCAGTACCGTCTTCGTTAAATTATGAGGAACTCATTCGTCTCGGCGGCGGTGGCGGTGGTCAGATGGTGGTTGACGACGAAGAAACTGACCGTAGCGGCGGCGGAAGCGGTGGTAATCGGTGGCCGCGTCAGGAAACGCTTGCTTTGCTTAAAATTAGGTCAGAGATGGATTCCGCGTTTCGTGATGCTACACTTAAAGGACCTCTCTGGGATGAAGTCTCCAGGAAGTTAGGGGAAATGGGGTATAAGAGAAATGCAAAAAAATGCAAAGAGAAATTCGAGAATGTTCAAAAATATTACAAACGCACAAAAGAAGGAAGAGGAGGGCGTCAAGATGGCAAAACCTACAAATTCTTTACGCAACTTGAGGCTCTTCATAACGCAAACGTGGCGCCTTCTTCTTCATCTTCATTCACACTGCCACAGCCCACCACCGTTGGCTTTGGGATTAGCAACCCTACTCCAATCTCATCCGTTAAAATTTCCACATCTTCCTCACAAAACCCAATGGGAATCTTTTCTCCTCCACCAGATCATTTCACTGTCCGGCCGCCACCCACCGTCGCCGCTCCTATGGGTGTAAGCTTTTCGTCGAACACCTCATCTGCATCCACTGAAGACGATGATAACGATGAAGATGAAGAGATGGGGTTTGATGTTGACCTTGAAGGGTTGCCGGAGAATGTAGCGGGTAGTAGTCGGAAGCGGCGGAGAGGGGTGGTTAAAGGAAATGAGTCAAGAACTCATAAGATGATGATGGAGTTTTTCGAGGGTTTGATGAAACAGGTAATGGAGAAACAAGAAGTTATGCAACAGAAGTTTTTGGAAGCGATTGAAAAAAGAGAACAAGATAGGATGGTCAGAGAAGAGAATTGGAAAAGGCAAGAAATGGCTAGGTTGAGTCAAGAACAAGAAAGAATGGCTCAAGAACGGACAATTTCTGCTTCTAGAGATGCTGCCATTATTGCTTTTCTTCAGAAATTTACTGGCCAAACCATTCAATTTTCAGCCCCACAACAACAACAACAACAATTTGATTTGGCGCCTGTGCCTGTGGCTGTACCTGTATCCGTAGCTGTGTCTGTACCTATGCCTATGCCTGTGCCAGCGCCACTATCTCCTGTCCCCTCTCAGCCATTGCAACCACAAACTCTGCCACAGCCGCCTTCAAATACAATCCCATTGGATCAACCAATGTTTCAGGAAATTAGCCAAGGAGGAGGAGATGGATCTTCAGAACCCATTTCTTCAAGATGGCCAAAACAGGAAGTTTTAGCTTTAATAAAACTGAGAGGTGGGCTTGAATCCAGGTATCAAGAAACAGGTCCAAAGGGTCCTCTGTGGGAAGAGATTTCAGCTGGAATGGCACGGATGGGTTACAAGAGAAGTGCTAAAAGATGTAAAGAGAAATGGGAGAATATCAATAAGTATTTCAAGAAAGTTAAAGAAAGCAACAAAAAACGTCGTGAGGATTCTAAAACCTGCCCTTATTTCAATGAACTCGATGCTCTCTACCGCAAGAAAATCCTTTCTGCTTCTGCTTCTGATTCTGGTTCCTTTAGTGATACCAACAAATTTGAACAAAACCCAACAACAACGACAACAACAACAACAGATCTTCAACCTCAACCCCATTCTTCCATTCCTCAAGGTTTATCCGCTACTCTTTTTGGTGAAGGAACAGAAGAACAACCATCATCCACGAAGCCAGAAGACATTGTGAATGAGTTGATGGAGCTGCAGGACGACATCTACCAACGTCATCTCGATCAAGATGATGACGACGAAAACGACGATTATTGCAGTGATGATGATGATGATTTACCAGAAGAAAAGAGAAACAGTAACATTGATTATAAAATAGAGTTTCAAAGAAGAAACAATGTAGGAAACTCCAATGGCGTTGCGAGTGAGTTTCAATCAATGGCGGTGGTTCAATAG 2094 44.89 MEEAAGGSGSGLPDPSQLFGVSTPPPPLTVDAAMSDSQQVEAASPISSRPPAVPSSLNYEELIRLGGGGGGQMVVDDEETDRSGGGSGGNRWPRQETLALLKIRSEMDSAFRDATLKGPLWDEVSRKLGEMGYKRNAKKCKEKFENVQKYYKRTKEGRGGRQDGKTYKFFTQLEALHNANVAPSSSSSFTLPQPTTVGFGISNPTPISSVKISTSSSQNPMGIFSPPPDHFTVRPPPTVAAPMGVSFSSNTSSASTEDDDNDEDEEMGFDVDLEGLPENVAGSSRKRRRGVVKGNESRTHKMMMEFFEGLMKQVMEKQEVMQQKFLEAIEKREQDRMVREENWKRQEMARLSQEQERMAQERTISASRDAAIIAFLQKFTGQTIQFSAPQQQQQQFDLAPVPVAVPVSVAVSVPMPMPVPAPLSPVPSQPLQPQTLPQPPSNTIPLDQPMFQEISQGGGDGSSEPISSRWPKQEVLALIKLRGGLESRYQETGPKGPLWEEISAGMARMGYKRSAKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFNELDALYRKKILSASASDSGSFSDTNKFEQNPTTTTTTTTDLQPQPHSSIPQGLSATLFGEGTEEQPSSTKPEDIVNELMELQDDIYQRHLDQDDDDENDDYCSDDDDDLPEEKRNSNIDYKIEFQRRNNVGNSNGVASEFQSMAVVQ 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1458956 1461277 + CaPI482276_01g001180.1 Cam01g0118 117200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0118 697 MobiDBLite consensus disorder prediction 256 272 - -
Cam01g0118 697 FunFam Trihelix transcription factor GT-2 92 153 - -
Cam01g0118 697 MobiDBLite consensus disorder prediction 32 54 - -
Cam01g0118 697 MobiDBLite consensus disorder prediction 678 697 - -
Cam01g0118 697 MobiDBLite consensus disorder prediction 643 657 - -
Cam01g0118 697 MobiDBLite consensus disorder prediction 67 94 - -
Cam01g0118 697 FunFam Trihelix transcription factor GT-2 470 531 - -
Cam01g0118 697 MobiDBLite consensus disorder prediction 565 604 - -
Cam01g0118 697 CDD GT1 468 533 - -
Cam01g0118 697 CDD GT1 90 155 - -
Cam01g0118 697 MobiDBLite consensus disorder prediction 639 667 - -
Cam01g0118 697 ProSiteProfiles Myb-like domain profile. 462 526 IPR001005 -
Cam01g0118 697 MobiDBLite consensus disorder prediction 243 296 - -
Cam01g0118 697 MobiDBLite consensus disorder prediction 1 55 - -
Cam01g0118 697 Gene3D - 92 153 - -
Cam01g0118 697 Gene3D - 470 531 - -
Cam01g0118 697 Pfam Myb/SANT-like DNA-binding domain 468 555 IPR044822 -
Cam01g0118 697 Pfam Myb/SANT-like DNA-binding domain 90 176 IPR044822 -
Cam01g0118 697 PANTHER FI21293P1 68 579 - -
Cam01g0118 697 ProSiteProfiles Myb-like domain profile. 90 148 IPR001005 -
Cam01g0118 697 SMART sant 88 150 IPR001005 -
Cam01g0118 697 SMART sant 466 528 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0118 Cam-Chr1:1458956 Cam08g0789 Cam-Chr8:9368873 1.60E-93 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51177 PF13837 Myb_DNA-bind_4 3.60E-23 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0118 - - - 0.0