Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0127 ATGATGGACACGCCGGAGCCGGAGGAGGAAGCTGCCGGTGGTTCTAATAGCGGCGGCGGTGGCGGAAGAGGAGGAGGAGAAGTTGAAAGGGAACACATGTTTGACAAAGTGGTGACTCCAAGTGATGTAGGGAAATTAAATCGGCTTGTTATTCCAAAGCAACACGCTGAGAGATTTTTCCCTTTAGATTCATCAACAAACGACAAGGGTTTACTGTTAAACTTCGAAGATCGAAACGGCAAATCATGGCGGTTCCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTTATGACCAAAGGCTGGAGTCGCTTCGTCAAGGAGAAACGCCTCGACGCCGGCGATATCGTCTCATTTCAACGTGGGGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGCCGCCCTGAACTCCCCATCCACCATCATCACCACCACCACTATCCCACCACCACCTCTCTCCGACCGAGCATCGTCGTCCCGAGCGGTGGTGCTACCACTTGGGGGCCATTAGTCTGGCAGCCACTCGGCGCAACAACAGCCGGATACCACCATCAGCCAGCTGCCGTAACACCGCGGGACCACACACACTTGTCGCAAATAAATAACAACAACAACAATGTGAATGGGATGTGTTGTCCGTACGGATATGGGAGTGTTGAAACAACAACTTCTGGGTTGGTGTATTTGAGGACAGAATTAGGAGGAAGATCAAGAAGGGCAACTCCAAGATTAGGGGAAGAGGAATTTGAGTTGGAAATGGAAGGGAATAATAATTATCAGATGCAGCAGGAGTATTGTAGTAATGGTGGGGGTGCTTCAATGGTGATTCTACAAGGAAACTGTATGGAAGATCATAAATTAAAAACAACAAATAATAATAATAATAACAATAATAGTGAAGAAGATATACCAGTGAAGAAATCAAGATTGAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGATTGTGATTTATTATTATCTACAAACCCCAAAACCACTACTACTACCACTCAATTCCAATTGCCTTCTTCAATTTACAAGTAA 1083 45.71 MMDTPEPEEEAAGGSNSGGGGGRGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGEIGRDRLYIDWRRRPELPIHHHHHHHYPTTTSLRPSIVVPSGGATTWGPLVWQPLGATTAGYHHQPAAVTPRDHTHLSQINNNNNNVNGMCCPYGYGSVETTTSGLVYLRTELGGRSRRATPRLGEEEFELEMEGNNNYQMQQEYCSNGGGASMVILQGNCMEDHKLKTTNNNNNNNNSEEDIPVKKSRLRLFGVNMEMESPISSPSSDDCDLLLSTNPKTTTTTTQFQLPSSIYK 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1580753 1581835 + CaPI482276_01g001270.1 Cam01g0127 117209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0127 360 SMART B3_2 34 139 IPR003340 GO:0003677(InterPro)
Cam01g0127 360 ProSiteProfiles B3 DNA-binding domain profile. 34 139 IPR003340 GO:0003677(InterPro)
Cam01g0127 360 FunFam B3 domain-containing protein 27 148 - -
Cam01g0127 360 SUPERFAMILY DNA-binding pseudobarrel domain 31 140 IPR015300 -
Cam01g0127 360 CDD B3_DNA 32 121 IPR003340 GO:0003677(InterPro)
Cam01g0127 360 Gene3D - 28 150 IPR015300 -
Cam01g0127 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 22 321 IPR044800 GO:0003700(InterPro)
Cam01g0127 360 MobiDBLite consensus disorder prediction 1 28 - -
Cam01g0127 360 Pfam B3 DNA binding domain 34 138 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0127 Cam-Chr1:1580753 Cam05g2502 Cam-Chr5:32833227 6.80E-40 dispersed
Cam06g0239 Cam-Chr6:4189233 Cam01g0127 Cam-Chr1:1580753 9.00E-53 transposed
Cam01g0127 Cam-Chr1:1580753 Cam07g0833 Cam-Chr7:20827098 1.70E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51179 PF02362 B3 7.10E-29 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0127 K09287 - csv:101211271 498.819