Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0165 ATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAGCCAATTGAAGAAATTGTGACAAACACATGCCCAAAACCAAGTGTTTCAATTTTAGAGAGGAAGATTAGACCTCAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAACCAATACCAAGTTTTGTTATTACAATAATTATAGCCTTACACAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGCTCCTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGGAAGAACAAAAGACCTTCTTCTTCTTCATCATCATCTACATCTCCCACACCTTCTTCATCTCAACCTATTCCCAAGAAAATTCTTGATCTCCCTCAAAACCCTAAATCCACCCAAGATCTCAACTTGTTCTTCCCACCCTCGAACCATCAAGATCATCATCATTTCATCACCAATAGCCTCCCCGAAATCGTTGCCCCTGCGATGGCCAGTTCCTCATCAGCCTCTACTGTTGCGACGGCGGCGGTGTCGTCGTCGCCTTCAGCCCCATCGCATCATCATCCGCTTTCGGCAATGGAGCTTCTCGCCGGGATGGCGAACAACAACAACAACAACTCTAGGGGTTTGAATTGTTTCTTTCCAATGTCGTCTGTTGTTGTCCCTGATCCAGCTGGCTCCCTTTACACGGTAGGGTTTCCCGATCTCCATGATCAGTTCAAGTCAAACCTCGGATTATTCTCTCTTGATGGCTACAGCGTTGTCCCGACCGAGGGAAGCAAGGGTGGGGGGAGGCTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGGGTCTAATGGAGGAGTTGAACAAGGCAAAGAGCAAGGAGAGCATAATTCAAGTGGGTATTGGAATGGAATGTTGGGTGGAGGATCATGGTAA 915 45.9 MDTAQWPQEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSSSSSSTSPTPSSSQPIPKKILDLPQNPKSTQDLNLFFPPSNHQDHHHFITNSLPEIVAPAMASSSSASTVATAAVSSSPSAPSHHHPLSAMELLAGMANNNNNNSRGLNCFFPMSSVVVPDPAGSLYTVGFPDLHDQFKSNLGLFSLDGYSVVPTEGSKGGGRLMQLPFEDLKQGSNGGVEQGKEQGEHNSSGYWNGMLGGGSW 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1993337 1994800 - CaPI482276_01g001650.1 Cam01g0165 117247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0165 304 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam01g0165 304 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam01g0165 304 MobiDBLite consensus disorder prediction 273 304 - -
Cam01g0165 304 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam01g0165 304 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 180 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0165 304 MobiDBLite consensus disorder prediction 94 135 - -
Cam01g0165 304 MobiDBLite consensus disorder prediction 84 135 - -
Cam01g0165 304 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0165 Cam-Chr1:1993337 Cam02g2154 Cam-Chr2:34344491 2.30E-33 dispersed
Cam01g0165 Cam-Chr1:1993337 Cam01g0028 Cam-Chr1:667267 2.70E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51181 PF02701 zf-Dof 4.50E-33 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0165 - - - 0.0