Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0166 ATGGAAATGGAAGAACTATACAACTATATATTCTTTGCCTCCGCATCTGGTAACTCCTCTGGAAAGAAGAGTCCAAAGAGAGGAAGAGCCCCAGATGGGTTTGACCCGAGTTTTGGGGTGACCCAGTTACTGATATTTTTGCTTCTGTTTCGCTGGAGAGTCGTGATTGTGTTTACTGTGGTTGTTTTGGGGGTTGGTCAATTTTGTGGACTGATTCGATGTTCCTGTTTTGATTATATTGATGAGTTTGTGACCGTGGATCTAACGTCAGGATGCCATGGATTTGAATCGAAGAGGAGGGGTCAAGAGAGAGAACAGATGATGGATTTGATTTACTGTGAGGAGGAAATTGAAAGATTCTACGACACCCGTGAGGAGATCTCCTCTGTGTCTGATTGGGGATCTGATTGCTCTGAGAACTGCAGCACAAGTTTTGGGGATGACGGTGATATTCCTGAAAGTTTAAGATATGTGGGATGGATAGGTAATCTGGAAAGTGTTTGTGAGCGAAGAAACAAGTTCTTCAAATGGATGGGTTTGGATTTGGATCAGACTTTTGACGACAGAGATGAAGAGGAAGGGGATTCGTACAGGAGGGTTTATCGTGATAGAATTCTGGAAGATTGTGGAACGGTGTTGAGACTTTCCGGTTCTGAAGAGGAGTTGTCTTCAAGTCTTACTATGTCTTCCATGTCAAATGAAGCTCCAGAATCATCAGGAAATGTTTCGGTGGAGGAGAATCATGTTTATACTATCAGGAATTTGGACAATGGGACTGAGTTTATTGTGGATAGTTTCAGTCAAGATGGAGTGTTGAGCATGTTGCGTGAAGTTGGTTCAAACCGATCCTTCAGTTTTGATGAGTTTGAGAGAAACATTGGGCAGTCTCCCTTGGTTCAGCAATTCTTTCGCAAAAATGTTGAAAAGGCTGGGCCTATAGTCAATGCCAGGAAAGAGGCAAAGAAGGGTTGGCTGAGAAAATTGGGTGCGGTTGCTTGTATAGTTGACAATGGGGTGGGCGCAATGAAAAACGGTGTTTCCAATTCTTCATCTAAGGCAGGGATACAACAAGTTCGCGTTCATCCATATAAAAAGCAATCCAAAGAATTATCATCCCTTTTTGTGGGACAAGAATTTGAAGCACACAAAGGGTCAATTTCTACAATGAAGTTCAGTTTTGATGGAAGATACTTGGCTACTGCTGGTGAAGATGGTGTTGTGCGTGTATGGCAGGTGATGGAAGATGTGAGATTCGATAATTTCGACATTCACAATGTTGATCCTTCCTCTTTGTACTTCTCAATGAATCATTTGTCCAAATTAGACCCCTTGGATGTACCAAAAGAGACTGTAGGCAAGACGAAATTGAAGAGATCATCAAGCACAGCCTGTGTAATTTTTCCACCAAAGCTATTTAGAATATTGGAGAAACCTCTGCATGAGTTCTTGGGACACAGTGGCGAGGTCTTGGATCTATCTTGGTCAAAGAAAGGGCTTCTGCTGTCATCTTCTGTTGATAAGACAGTACGTCTTTGGCAGCTGGGATGTGATACATGCCTAAGAGTTTACTGTCATAATAATTATGTTACGTGCGTTAGTTTCAATCCTATAGATGAAAATCATTTCATAAGTGGCTCAATAGACGGTAAAGTTCGGATTTGGGAAGTTCTTGCTTGTCAAGTGGTTGATTATATCGATATCCGTGAGATAGTAAGCGCAGTCTGTTACAGACCGGATGGAAAGGGAGGAATTGTGGGGTCCATGACTGGAAACTGCCGTTTTTATAATATTATAGATAATCGATTGGAGCTGGATGCTCAGATATGCTTAAATGGGAAAAAGAAGTCGCCTGGGAAGAGAATAATTGGTTTTGAGTTTTCTCCTAGCGACCCGAGTAAACTAATGGTCTGTTCTGTTGATTCACCGGTTCATATAATTTCCGGGAGTGATGTCATTTGCAAATTCAAGGGTCTTCGTAATGGTGGAAACAAGATGTCTGCTTCTTTTACCTCGGATGGAAAGCATATTGTTTCAGCCAGTGAAGAAAACGTCTACGTTTGGAACTACAATTGCAAGGACAAAGCATCTCGGAAAAAGAAAATTTGGTCGTCCGAAAGTTTCTTCTCTCGTAGCGCATCAATAGCCATACCTTGGTCTGGTGTGAAAATCACACCTGAACCACCACTGTCCCCAACACGAGTTTGCGATACAGCGGGAAGTATCCCCGAAATGGAGCCGAAGTATCCTGATGACGATGGTGATAGAGAACACAAGGTTCCGTCATCATCACCAGATTGCTTCTCTCTAAGTCGCACTCTTTTTCCCGAGTTGCTCAAAGGAACTGCAACTTGGCCGGAGGAGAAACTCCATGATTCTAGCTCAATGATCCCTTCCCCTTCAATGTGCAAGACTGAGTTCAAGTTTTTGAAGAATGCTTGCCAGAGCATGCTTAGCTCTCCGCACATGTGGGGTCTTGTGATCGTAACTGCTGGATGGGACGGACGAATCAGAACATTTCTCAACTACGGTTGTCGAGATATCGAGATTAATCTGGAAGGGGATGTCGGGATAATACAGAGGCATCTATCTGGTGGGGCTTTTGCTTTGCCTGTCCCTAAATATGGATAA 2628 42.96 MEMEELYNYIFFASASGNSSGKKSPKRGRAPDGFDPSFGVTQLLIFLLLFRWRVVIVFTVVVLGVGQFCGLIRCSCFDYIDEFVTVDLTSGCHGFESKRRGQEREQMMDLIYCEEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDGDIPESLRYVGWIGNLESVCERRNKFFKWMGLDLDQTFDDRDEEEGDSYRRVYRDRILEDCGTVLRLSGSEEELSSSLTMSSMSNEAPESSGNVSVEENHVYTIRNLDNGTEFIVDSFSQDGVLSMLREVGSNRSFSFDEFERNIGQSPLVQQFFRKNVEKAGPIVNARKEAKKGWLRKLGAVACIVDNGVGAMKNGVSNSSSKAGIQQVRVHPYKKQSKELSSLFVGQEFEAHKGSISTMKFSFDGRYLATAGEDGVVRVWQVMEDVRFDNFDIHNVDPSSLYFSMNHLSKLDPLDVPKETVGKTKLKRSSSTACVIFPPKLFRILEKPLHEFLGHSGEVLDLSWSKKGLLLSSSVDKTVRLWQLGCDTCLRVYCHNNYVTCVSFNPIDENHFISGSIDGKVRIWEVLACQVVDYIDIREIVSAVCYRPDGKGGIVGSMTGNCRFYNIIDNRLELDAQICLNGKKKSPGKRIIGFEFSPSDPSKLMVCSVDSPVHIISGSDVICKFKGLRNGGNKMSASFTSDGKHIVSASEENVYVWNYNCKDKASRKKKIWSSESFFSRSASIAIPWSGVKITPEPPLSPTRVCDTAGSIPEMEPKYPDDDGDREHKVPSSSPDCFSLSRTLFPELLKGTATWPEEKLHDSSSMIPSPSMCKTEFKFLKNACQSMLSSPHMWGLVIVTAGWDGRIRTFLNYGCRDIEINLEGDVGIIQRHLSGGAFALPVPKYG 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2026842 2032336 + CaPI482276_01g001660.1 Cam01g0166 117248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0166 875 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 514 - -
Cam01g0166 875 PRINTS G protein beta WD-40 repeat signature 500 514 IPR020472 -
Cam01g0166 875 PRINTS G protein beta WD-40 repeat signature 398 412 IPR020472 -
Cam01g0166 875 PRINTS G protein beta WD-40 repeat signature 542 556 IPR020472 -
Cam01g0166 875 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 522 556 - -
Cam01g0166 875 MobiDBLite consensus disorder prediction 740 764 - -
Cam01g0166 875 Gene3D - 364 707 IPR015943 GO:0005515(InterPro)
Cam01g0166 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 514 IPR001680 GO:0005515(InterPro)
Cam01g0166 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 522 556 IPR001680 GO:0005515(InterPro)
Cam01g0166 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 379 412 IPR001680 GO:0005515(InterPro)
Cam01g0166 875 SUPERFAMILY WD40 repeat-like 375 838 IPR036322 GO:0005515(InterPro)
Cam01g0166 875 PANTHER WD REPEAT DOMAIN 44 118 844 IPR040324 -
Cam01g0166 875 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 379 412 - -
Cam01g0166 875 Pfam WD domain, G-beta repeat 377 410 IPR001680 GO:0005515(InterPro)
Cam01g0166 875 Pfam WD domain, G-beta repeat 477 512 IPR001680 GO:0005515(InterPro)
Cam01g0166 875 Pfam WD domain, G-beta repeat 518 554 IPR001680 GO:0005515(InterPro)
Cam01g0166 875 MobiDBLite consensus disorder prediction 745 761 - -
Cam01g0166 875 SMART WD40_4 372 411 IPR001680 GO:0005515(InterPro)
Cam01g0166 875 SMART WD40_4 557 596 IPR001680 GO:0005515(InterPro)
Cam01g0166 875 SMART WD40_4 648 688 IPR001680 GO:0005515(InterPro)
Cam01g0166 875 SMART WD40_4 475 513 IPR001680 GO:0005515(InterPro)
Cam01g0166 875 SMART WD40_4 607 647 IPR001680 GO:0005515(InterPro)
Cam01g0166 875 SMART WD40_4 516 555 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0166 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0166 Cam-Chr1:2026842 Cam11g1842 Cam-Chr11:30945056 6.60E-105 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g208 . . . . . . . . . . Cma02g00931 Cma15g01305 Car02g00680 Car15g01175 . . Cpe05g00780 . . . . . . . . . . . . . . . . . . . Csa05g00028 Chy09g01316 . . . Bda07g01942 . . . . . . Cmo02g00940 Cmo15g01372 . . . . . . Bhi12g00103 . . . . . Lcy12g1541 Cla01g00160 Cam01g0166 Cec01g0164 Cco01g0167 Clacu01g0162 Cmu01g0161 Cre09g2345 Lsi09g00152 . . Cme09g01865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009425 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 4 3 2 34