Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0178 ATGTTGCCTGCTACGAAGCAGACAACGAAAGGGACGACGCGCGCCAAGCCGTTTCGCGATTCTTTTTCTTTTCTTGTTTTTGTGACGGCGTTTTTCTCCCTCGACGAGCGACAGAGAGGATCGGCGGTTGATTTTCGAGCGGTTTCTGTCACCGGTGCAGTGACGAAGGAGTTTCAGATTTTGGAGGTATTTGTCTCTGTATATCTCTCTGTGGAGGAAGGAATTGGAATTAGTGATTTCTTGATAGGTTGTGGAAGAGATGATATGTATATGGAGCTATGGAGGGCTTGTGCAGGTCCACTGGTTGATGTACCTCGCGTTGATGAGAGAGTTTTCTATTTCCCTCAGGGCCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTGCTTCAAAGATTCTATGTCGTGTAATTCATATTGAGCCGCTGGTACTACTCTTTCTCATCTTAAGTTGCTCTGTTATTTCTGCTTACTTCATTGCAGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTAATGCCGGAATCAGATCAAAATGAGCCTAAAAGTATGGATCCATGTCCTCCTGAACCAGCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGACACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTACTGAGTGCCTACCTCCTTTGGACATGACTCTGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTACATGGATATGAATGGCGATTCAAGCATATTTTCAGAGGACAGCCACGAAGGCACCTGCTGACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACAATGGAGAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCACCATCTGTTATATCGAGTCAGAGCATGCACCTAGGGGTGCTCGCAACTGCATCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAACTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGCAGATATTTCACCTCATTGGCCTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTATGAGACCTGACAGGGTATCACCTTGGGATATAGAACCACTCACATCTTCAGCAGTCACAGGTCTATCTCAGCCCGTTTCAAAAAACAAAAGGCCTCGACAACCGACTCCAGCTCATGATGGTGCTGATTTGACTAAGCCAGGACATTGGGATTCTGGATTGGCACAGCCACATGATGGTAAACAATGTAGTAATGCAGCTGAAAGCAGAAAGGGTGAAAATAATGAATTGTGCCACCATAGAGAGACAGATACCATCAGCAACAGCTCATGTGTATCAAGAGCACAGACTGATACCTGGCTATCTCCTACCCAATCCAATAGTTATAAACACCCAGTACATGACATGGCGCAGGATTATAAAACTGTCCCTGGCGTTGGTTGGTCCTTTCTGTTAGGAACTTCAACCTCTCATTTGGTTAAGTTAAGTGATGATCAACAAATACTGGACCCCACTGAAAATGGGAGGAACGGTGAAACAGTAGCTAGTTGTAGATTGTTTGGCATTGATCTCAATCATTTAGCTGCTGAGAAAGAACCTTCTCAACCAAGCAGTGTGTCTTGCGACACAGATGGGCGAATCAGTACCTTGTCAGTGGCTCAGTCCGATCCAAAATCTGACAACTTGGAGGTATCTATAGAAAGAAAATCAGAACCATCGCAGGCATCTCTGAAGGAGATTCAATGCAATCAAAGTAGCTCATCTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGGATGGCCGTGGGTAGGGCAGTGGACTTAACCATCTTAGAAGGCTATGACCAACTAATAGATGAACTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATTGTATATACTGACGATGAAGGGGATATGATGCTTGTTGGAGATGACCCATGGGAAGAATTCTGTAACATGGTGAGAAGAATTTTCATATGCTCTAGGGAGCAAGTGAAAAACATGGGCTCAGGAAGCAAGCAGCTGACCCCACTAGAAGTTGAAGGGGCTGTAGTAATCCCGGATTCCCCTGCAGTTTGA 2325 44.69 MLPATKQTTKGTTRAKPFRDSFSFLVFVTAFFSLDERQRGSAVDFRAVSVTGAVTKEFQILEVFVSVYLSVEEGIGISDFLIGCGRDDMYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLASKILCRVIHIEPLVLLFLILSCSVISAYFIADHESDEVYAQITLMPESDQNEPKSMDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGELRVGVRRRARQQSSMPPSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNNFSVGMRFNMSFEGEDSPERRFSGTIIGAADISPHWPNSSWRSLRVQWDEQTSIMRPDRVSPWDIEPLTSSAVTGLSQPVSKNKRPRQPTPAHDGADLTKPGHWDSGLAQPHDGKQCSNAAESRKGENNELCHHRETDTISNSSCVSRAQTDTWLSPTQSNSYKHPVHDMAQDYKTVPGVGWSFLLGTSTSHLVKLSDDQQILDPTENGRNGETVASCRLFGIDLNHLAAEKEPSQPSSVSCDTDGRISTLSVAQSDPKSDNLEVSIERKSEPSQASLKEIQCNQSSSSNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKNMGSGSKQLTPLEVEGAVVIPDSPAV 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2125532 2131927 + CaPI482276_01g001780.1 Cam01g0178 117260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0178 774 MobiDBLite consensus disorder prediction 603 632 - -
Cam01g0178 774 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 88 752 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam01g0178 774 Pfam B3 DNA binding domain 211 312 IPR003340 GO:0003677(InterPro)
Cam01g0178 774 Pfam Auxin response factor 337 415 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam01g0178 774 SUPERFAMILY CAD & PB1 domains 658 739 - -
Cam01g0178 774 MobiDBLite consensus disorder prediction 602 667 - -
Cam01g0178 774 MobiDBLite consensus disorder prediction 640 667 - -
Cam01g0178 774 Gene3D - 372 445 - -
Cam01g0178 774 FunFam Auxin response factor 209 313 - -
Cam01g0178 774 Gene3D - 658 751 - -
Cam01g0178 774 Pfam AUX/IAA family 709 742 IPR033389 -
Cam01g0178 774 Pfam AUX/IAA family 653 699 IPR033389 -
Cam01g0178 774 FunFam Auxin response factor 372 443 - -
Cam01g0178 774 Gene3D - 208 313 IPR015300 -
Cam01g0178 774 SUPERFAMILY DNA-binding pseudobarrel domain 202 340 IPR015300 -
Cam01g0178 774 ProSiteProfiles B3 DNA-binding domain profile. 211 313 IPR003340 GO:0003677(InterPro)
Cam01g0178 774 FunFam Auxin response factor 658 751 - -
Cam01g0178 774 CDD B3_DNA 209 311 IPR003340 GO:0003677(InterPro)
Cam01g0178 774 ProSiteProfiles PB1 domain profile. 663 744 IPR053793 -
Cam01g0178 774 SMART B3_2 211 313 IPR003340 GO:0003677(InterPro)
Cam01g0178 774 MobiDBLite consensus disorder prediction 442 493 - -
Cam01g0178 774 MobiDBLite consensus disorder prediction 442 456 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0178 Cam-Chr1:2125532 Cam07g1412 Cam-Chr7:28640738 5.90E-222 dispersed
Cam01g0178 Cam-Chr1:2125532 Cam09g0937 Cam-Chr9:9621923 1.50E-201 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51184 PF02309 AUX_IAA 1.90E-12 CL0072 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0178 K14486 - csv:101209208 1262.67