Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0209 ATGAATATGGATTTGGACTCTGTTTTTTCCTTCCCCATCAAATACACTGAGCATCTCAACCATGTTAAGCTCACTTCAATGCCGGAAATCAGGCCTAGAGTTGTACGGATTTCCGTCACCGACGGTGACGCTACAGATTCCTCCAGCGATGATGAGTCCGAAATGTTTGGTCGACACAGAGTTAAGAAATTTGTGAATGAAATTACGATCGAACCGTCTTGTTCTGGCGAAGGGAACGGAACCTGGGGTCTGAATAGATCGGCGAGGACTGGACTGAGACGCTCCACCGGGAAATGTGGGGTGTCGTCGAGGAATCGTCGGTCGGCGAAGGTCACTCCTGGGAAGAAGTTCCGTGGCGTGAGACAGAGGCCGTGGGGAAAATGGGCGGCGGAAATCAGAGACCCACTCCGCCGTGTACGCCTCTGGTTGGGAACTTACGACACGGCGGAGGAAGCCGCCATGGTTTATGACAACGCAGCCATTCAACTTCGGGGACCCGATGCACTCACCAATTTCACAACTCAACAACCCAAATCGTTCGCCGGAAAATGCTCTGGCTATAACTCTGGCGAGGAATCGAACAACAACATTTGCTCTCCGACCTCCGTCCTCCGATGTCCTTCTCCACCCATCGAAGAAGCCCAATCGCAAATCCCCGGCGAGCCGGACAACTCATGCGTGTCGGAAAATTTCTCGTCGGAGTTCTCCGACTTCTCGAGCTGCTCTGATACCTTTATTCCCGACGACATTTTCGCCTTCGAAACTTCGATTCCAACCTTATTCGACGAGATGGGCCTCCAAAATCAAACCAACTTCTTCAGCAACGACAGTTTTTTCAACGGCGTGCTCCACAGTCCGGTCGAAGAAATCGGATTCGGGTTCGAATACCCTCCACCTCCCGATGATTTCTTTCATGACTTCAGCGATGTGTTCGGGTCGGATCCTCTCGTCGCACTCTGA 960 51.98 MNMDLDSVFSFPIKYTEHLNHVKLTSMPEIRPRVVRISVTDGDATDSSSDDESEMFGRHRVKKFVNEITIEPSCSGEGNGTWGLNRSARTGLRRSTGKCGVSSRNRRSAKVTPGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQQPKSFAGKCSGYNSGEESNNNICSPTSVLRCPSPPIEEAQSQIPGEPDNSCVSENFSSEFSDFSSCSDTFIPDDIFAFETSIPTLFDEMGLQNQTNFFSNDSFFNGVLHSPVEEIGFGFEYPPPPDDFFHDFSDVFGSDPLVAL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2379233 2380192 - CaPI482276_01g002090.1 Cam01g0209 117291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0209 319 Gene3D AP2/ERF domain 115 175 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0209 319 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0209 319 MobiDBLite consensus disorder prediction 93 108 - -
Cam01g0209 319 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677(InterPro)
Cam01g0209 319 MobiDBLite consensus disorder prediction 93 117 - -
Cam01g0209 319 CDD AP2 115 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0209 319 SMART rav1_2 116 179 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0209 319 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0209 319 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0209 319 Pfam AP2 domain 116 165 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0209 319 FunFam Ethylene-responsive transcription factor 2 115 174 - -
Cam01g0209 319 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 225 IPR050913 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0062 Cam-Chr1:965543 Cam01g0209 Cam-Chr1:2379233 7.00E-37 dispersed
Cam01g0209 Cam-Chr1:2379233 Cam05g0134 Cam-Chr5:1587330 8.50E-34 dispersed
Cam01g0209 Cam-Chr1:2379233 Cam05g1031 Cam-Chr5:9311187 7.60E-51 wgd
Cam01g0209 Cam-Chr1:2379233 Cam07g1508 Cam-Chr7:29715788 6.40E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51187 PF00847 AP2 1.20E-13 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0209 - - - 0.0