Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0211 ATGGAAGCTCTGTGGATTTTCAGCTTCGTTGTGGTTCTGGGGTTGGTTTTTTCGCCAATTAATGGCGACCCAGTTGAAGACAAGCGAGCTCTGCTTGATTTTGTCAAGAATCTCCCGCACTCTCGCTCTCTTAATTGGAATGCGGCTTCTCCGGTTTGTCATTACTGGACTGGTATAACTTGCAGTCAAGATGAATCTCGTGTTATAGCCGTTCGACTGCCCGGAGTTGGCTTTCACGGCCCGATTCCAGCGAATACTCTTAGCCGGCTATCGGCACTGCAAATATTGAGTCTCAGATCCAATCGTATAACGGGGGATTTCCCTTTGGATTTCTCGAATCTTAGTAACTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCTGGGCCATTGCCTTCCAATTTCTCTGTCTGGAAGAATCTCACCTTTGTGAATCTCTCTAATAATGGCTTCAATGGCCGTATTCCACATTCGCTTTCTAATCTGACAGCACTCACAGGTTTGAATCTGGCAAACAACTCTCTTTCAGGAGAAATACCTGACCTCCAAATCCCCAGATTGCAGGTTTTGGATTTGTCTAACAACAATCTGAGTGGGAGTGTGCCTAAATCTTTACAGAGATTTCCAAAGTCTGTATTTGTAGGCAATGACATATATTTTGGAAGTTCTTTATTAAACAATCCTCCCGTACCCGCGCCATTGCCCGTGTCGAATGAAAAGCCAAAGAATGCTGGTGGGCTTGGAGAAGCAGCATTGTTAGGAATTATAATTGCTGGTGGTATTTTGGGGCTTCTGGCATTTGGCTTTCTAATCCTTGTTTGCTTCTCAAGAAGGAAGAGGGAAGATGAATATTCTGGGGATCTTCAGAAAGGTGGAATGTCGCCTGAAAAAGTGATATCAAGGACTCAAGATGCAAACAACAGATTGGTTTTCTTTGAGGGGTGTCATTATGCATTTGACTTGGAGGATTTGTTGAGAGCTTCTGCTGAGGTCTTGGGGAAGGGAACTTTTGGTACTGCATATAAAGCAATTCTAGAGGATGCCACCACAGTTGTTGTTAAGAGGTTGAAGGATGTAAGTGCTGGGAAACGCGATTTCGAGCAGCAAATGGAGATTGTTGGCAGTATCAGGCACGAGAATGTGGTTGAATTGAAGGCTTACTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTTTGGTCAGGGAAGCGTCTCGGCCATGTTACACGGTAAACGCGGAGAGGAAAAAACTCCATTAGATTGGGACACTAGACTGAGAATTGCAGTTGGTGCAGCACGAGGAATCGCCCGTGTCCATGCCGAAAATGGTGGGAAACTCGTCCATGGAAATGTGAAATCCTCAAACATCTTTCTGAACTCTCAACAGTATGGATGTGTGTCTGATCTTGGACTAGCAACTATAACAAGCTCACTCTCTCCACCTATATCCCGCGCTGCTGGTTACCGAGCCCCAGAAGTGACAGACACTCGCAAGGCGACACAAGCTTCAGATGTTTTCAGCTTCGGTGTCGTGCTCCTCGAGCTTCTAACCGGAAAGTCTCCAATTCATGCAACAGGCGGCGAAGAGATTGTTCATTTGGTTAGATGGGTTCATTCAGTTGTCCGAGAGGAGTGGACAGCTGAGGTATTTGATGTAGAGCTGATGAGATATCCCAACATAGAGGAAGAAATGGTTGAGATGTTACAAATAGCCTTATCATGTGTAGCCAGGATACCTGACCAGAGACCCAAAATGGCGGAAATTGTGAAGATGATCGAAAGTGTTCGACCAATGGAAGCCGAGAATCGACCTTCTTCCACGAACCGATCTGAAAGTTTGATGCCGCCGCAAGCTGTTGAGACAGAAAATTCAACCCCTCAGTGA 1890 45.08 MEALWIFSFVVVLGLVFSPINGDPVEDKRALLDFVKNLPHSRSLNWNAASPVCHYWTGITCSQDESRVIAVRLPGVGFHGPIPANTLSRLSALQILSLRSNRITGDFPLDFSNLSNLSYLYLQFNNFSGPLPSNFSVWKNLTFVNLSNNGFNGRIPHSLSNLTALTGLNLANNSLSGEIPDLQIPRLQVLDLSNNNLSGSVPKSLQRFPKSVFVGNDIYFGSSLLNNPPVPAPLPVSNEKPKNAGGLGEAALLGIIIAGGILGLLAFGFLILVCFSRRKREDEYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVVELKAYYYSKDEKLMVYDFFGQGSVSAMLHGKRGEEKTPLDWDTRLRIAVGAARGIARVHAENGGKLVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMAEIVKMIESVRPMEAENRPSSTNRSESLMPPQAVETENSTPQ 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2408086 2410596 - CaPI482276_01g002110.1 Cam01g0211 117293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0211 629 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Cam01g0211 629 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Cam01g0211 629 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Cam01g0211 629 MobiDBLite consensus disorder prediction 597 629 - -
Cam01g0211 629 FunFam pollen receptor-like kinase 1 295 400 - -
Cam01g0211 629 SUPERFAMILY L domain-like 37 208 - -
Cam01g0211 629 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Cam01g0211 629 FunFam Probable inactive receptor kinase RLK902 24 183 - -
Cam01g0211 629 PANTHER OS05G0588300 PROTEIN 8 607 IPR050994 -
Cam01g0211 629 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cam01g0211 629 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g0211 629 Gene3D Transferase(Phosphotransferase) domain 1 402 619 - -
Cam01g0211 629 Gene3D Ribonuclease Inhibitor 136 216 IPR032675 -
Cam01g0211 629 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
Cam01g0211 629 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524(InterPro)
Cam01g0211 629 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g0211 629 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Cam01g0211 629 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515(InterPro)
Cam01g0211 629 MobiDBLite consensus disorder prediction 602 629 - -
Cam01g0211 629 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 608 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0065 Cam-Chr1:985272 Cam01g0211 Cam-Chr1:2408086 3.40E-154 dispersed
Cam01g0211 Cam-Chr1:2408086 Cam11g0283 Cam-Chr11:4305745 1.20E-135 dispersed
Cam01g0211 Cam-Chr1:2408086 Cam05g1028 Cam-Chr5:9281237 1.20E-167 wgd
Cam01g0211 Cam-Chr1:2408086 Cam07g1496 Cam-Chr7:29585541 2.30E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84848 PF07714 PK_Tyr_Ser-Thr 1.40E-34 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0211 - - - 0.0