Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0226 ATGCAAGCTATGTTGGTAGAGGGTCTTCATCTCAGGCCGCTTGATGATATTGCATCCTCGGTGGCAAAGTTGAGGTTTAATTGTGTGCGTTTGACATACTCAATCCACATGTTCACACGCTATGCCAATTGGACTGTTCAACAATCCTTTGAGAATTTTGATTTGAAAGAAGCCATGGTAGGCATAGCCCAAAACAATCCTTCTATATTGAACATGACGCTAGTTCAGGCTTATGAAGCAGTGGTTGATTCACTTGCTGCACATGGAGTTATGGTAGTTTCTGATAATCATATAAGCCAGTCAAGATGGTGTTGTAGTGATGATGATGGCAATGGCTTCTTTGGAGACCGCTATTTTGATCCTCAAAAATGGCTACAAGGAATCAGTTTGGCAGCTCAAAGCCTAAAAAACAAACCCCAAGACAAGTCGATGGGCTTCAATTTGGATAATAAGCTTGTATTTGAGGCTCATTTGTACTCCTTCACAAACAACATGGGCGATTATTGGATGTCAAAGCCATTAAACACATTTTGTACTATTGTCAACCAAGGATTTGAAGATCGAGCTGGGTTTCTTGCAAGAGGACAAAACCCGATGCCAATCTTTGTGAGTGAGTTTGGGATCGACCAAACAGGTGCAAATGAGGGTCAAAATCGATTCCTAAGTTGCTTCTTTACTTATCTTACTGAGAATGATTTTGATTGGGGCCTATGGGCGTTGCAAGATCCAAGCTCAAATCTCACAACGTCATTCATAATGTACCATCCTCTTAGTGGCGAATGTGTGCGCATGGACAAAAAGTATCGATTAGGAGTCCGTGGCTGTAAGACCTCTAATCGTTGGAGTCATGAAAAAGACGGTGCTTCAATTAAGTTGGCAGGATCTATATTGTGCTTGAAAGCTGTTGGAGATGGACTCCCTCCAATTCTTTCTAAAGACTGCTCAAGCCAACAAAGTGCATGGAAATATGCTTCAAATGCCAAGCTTCAACTAGCCACTACAGATGAACAAGGACAAACCTTATGTTTGCAAAAGGCTTCTCATTCGCATCAAATTTTGACAACAAGTGCATATGTCCGAATGATTCCAAATGCCAAGGAGATCCACAAAGTCAATGGTTTACACTTGTCCCATCAAATGTACATCTCAATTAATTGA 1158 41.19 MQAMLVEGLHLRPLDDIASSVAKLRFNCVRLTYSIHMFTRYANWTVQQSFENFDLKEAMVGIAQNNPSILNMTLVQAYEAVVDSLAAHGVMVVSDNHISQSRWCCSDDDGNGFFGDRYFDPQKWLQGISLAAQSLKNKPQDKSMGFNLDNKLVFEAHLYSFTNNMGDYWMSKPLNTFCTIVNQGFEDRAGFLARGQNPMPIFVSEFGIDQTGANEGQNRFLSCFFTYLTENDFDWGLWALQDPSSNLTTSFIMYHPLSGECVRMDKKYRLGVRGCKTSNRWSHEKDGASIKLAGSILCLKAVGDGLPPILSKDCSSQQSAWKYASNAKLQLATTDEQGQTLCLQKASHSHQILTTSAYVRMIPNAKEIHKVNGLHLSHQMYISIN 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2547330 2550122 - CaPI482276_01g002260.1 Cam01g0226 117308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0226 385 Gene3D Glycosidases 145 257 - -
Cam01g0226 385 Gene3D Glycosidases 1 144 - -
Cam01g0226 385 SUPERFAMILY Ricin B-like lectins 249 346 IPR035992 -
Cam01g0226 385 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 240 357 - -
Cam01g0226 385 SUPERFAMILY (Trans)glycosidases 5 244 IPR017853 -
Cam01g0226 385 Pfam Cellulase (glycosyl hydrolase family 5) 124 242 IPR001547 GO:0000272(InterPro)|GO:0004553(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0226 K01179 - - csv:105435091 588.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0226 Cam-Chr1:2547330 Cam01g0539 Cam-Chr1:5702754 2.40E-176 dispersed
Cam01g0225 Cam-Chr1:2544293 Cam01g0226 Cam-Chr1:2547330 6.00E-85 tandem
Cam01g0226 Cam-Chr1:2547330 Cam01g0227 Cam-Chr1:2554397 8.20E-100 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g56 . . . . . . . . . . Cma02g01000 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01268 . . . . . . . . . . Cmo02g01450 . . . . . . . Bhi12g00177 . . . . . Lcy12g1599 Cla01g00219 Cam01g0226 Cec01g0217 Cco01g0227 Clacu01g0221 Cmu01g0214 Cre09g2295 Lsi09g00206 . . Cme09g01809
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000102 1 5 0 0 1 17 0 16 15 11 16 15 7 9 8 11 14 2 0 12 12 11 2 7 10 18 6 7 5 3 241