Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0234 ATGGGTGATGAATCCGAAGCAAGCACAAGTTTGCACAGACAATTACAAGGAGAATTTGTTTTGATCTTGCTTCAATGTAGAAACTATTTGCTACCTGTCTTATATCCAAAAGGGATACAACGTCTGGTAGCTTTAGTTGAGATGCTCTTAGAATCTCTTCAATCAACAGCTTCTCAGTTTTCACTAATGTTTCTTAGAGTTGTCAATCCTTCTGCATTATCTAAATGTTTCCGTTCAAGGCAGAAAGACAGGCAAAATACTAAGGAGGAGGTCAGCAAAGTTCCACTTCCATCTATGAGAAAGGAATGGAAAATTCGTAGAATATTACAGAAACGGAGACACACACAAAGTCGCCCGTGGATCTTCTTCACCGACAACCAACTAGAAGCCATGGCTGCTCCCGAAGCTCCTGTCTGTTACGTCGGCGTCGCTAGACAATCCGCAGCTTTTCGTCTCATGAAGCAGATGGGATGGGAAGAAGGAGAAGGGCTTGGCAAGGACAAGCAAGGGATCAAAGGCCATGTTAGAATTAAAAATAAACAAGATACTGCCGGAATTGGCACTGAGAAGCAGAACAATTGGGCTTTTGATACCACACAATTTGACAACATCTTGAAGAGACTGAAAGTGCAAGCAGTAAAAAACAGTGAGGAAGAGAAAGATGACACTTCGGTGGAAACTGTGGATGATGCAACTAATGATCAGGATCTGGTGACTAAGGCAACACGACCACAAGGAAGATACAAGAGAAGAGAGAGAGGAAAGCTTGTCAATGCATATTCTTCTAAGGATCTCGAAGGGATCCTTGTAAAAAAGGCAGAGGAGTTACCACAAACATGTTCCAAAGCAGATACCGAACCGGAGTCGTCAGATGAATCTGATATTGAAGTTCTTGCCATTGAAGAAAACAGAGTTGGTGTTTCTTCTGAATGGTGGGGCTACAAATATGGATTTATTTCCGGAGGATATTTGGGTGCCGAATCTAAACGAAGAAAAGGCCTTCAAACCAAAAGCAATGAAAATGTGCATGAGAGAACTGCCTTTCATGAAGATGATCAAGAGAATCTATACAAGCTTGTCCAAGATAAATCCACAACTGGAAAGCAAGGACTCGGGATTAAGAGTAGACCAAAGAAAATAGCGGGCTGCTACTTTCAAGGGAAAAAAACTTCCTTTGATGAAAGTGACAATGAAGACCCCAGTGATGCCGCACCTCCCTTGAAACGGAAGTATGATGACTCCTTCAGCACAACAATGGTAAAATCTGATGGGCAGCAGAAAGTGAAGTTGAGAAAATTGTGTAAAACGATTCTTGGCCAAGCACCTGGGGAATCTTTAAAGCTGAAGCAGCTGAAAGCTTTGATTGATGAACGTGCCACTTCAGTTTTTGCCAACTATTCTTCTAAGAAAGATGCACTTGCTTATTTGAAACAGAAGCTTGAGAGCAGTGGGAAGTTTTTGGTAGAAGGGAAAAGAGTGACTCTGCGGTCAAGAAGTGGTTGA 1503 42.12 MGDESEASTSLHRQLQGEFVLILLQCRNYLLPVLYPKGIQRLVALVEMLLESLQSTASQFSLMFLRVVNPSALSKCFRSRQKDRQNTKEEVSKVPLPSMRKEWKIRRILQKRRHTQSRPWIFFTDNQLEAMAAPEAPVCYVGVARQSAAFRLMKQMGWEEGEGLGKDKQGIKGHVRIKNKQDTAGIGTEKQNNWAFDTTQFDNILKRLKVQAVKNSEEEKDDTSVETVDDATNDQDLVTKATRPQGRYKRRERGKLVNAYSSKDLEGILVKKAEELPQTCSKADTEPESSDESDIEVLAIEENRVGVSSEWWGYKYGFISGGYLGAESKRRKGLQTKSNENVHERTAFHEDDQENLYKLVQDKSTTGKQGLGIKSRPKKIAGCYFQGKKTSFDESDNEDPSDAAPPLKRKYDDSFSTTMVKSDGQQKVKLRKLCKTILGQAPGESLKLKQLKALIDERATSVFANYSSKKDALAYLKQKLESSGKFLVEGKRVTLRSRSG 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2632920 2640510 - CaPI482276_01g002340.1 Cam01g0234 117316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0234 500 PANTHER G PATCH DOMAIN CONTAINING PROTEIN 131 493 IPR050656 GO:0005730(PANTHER)
Cam01g0234 500 MobiDBLite consensus disorder prediction 391 409 - -
Cam01g0234 500 Pfam G-patch domain 147 189 IPR000467 GO:0003676(InterPro)
Cam01g0234 500 SMART G-patch_5 143 189 IPR000467 GO:0003676(InterPro)
Cam01g0234 500 MobiDBLite consensus disorder prediction 391 410 - -
Cam01g0234 500 ProSiteProfiles G-patch domain profile. 145 191 IPR000467 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0234 K11135 - - csv:101213045 666.381
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g43 . . . . . . . Bma14g00598 . . Cma02g01425 . Car02g01194 . . . Cpe05g00361 . . . . . . . . . . . . . . . . Cone6ag0811 Cone9ag0810 . . Chy09g01262 . . . . . . Bpe11g00671 . . . Cmo02g01459 . . . . . . . . . . . . . . Cla01g00227 Cam01g0234 Cec01g0225 Cco01g0237 Clacu01g0229 Cmu01g0222 Cre09g2287 Lsi09g00217 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011517 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31