Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0236 ATGTCCCCAGTTCGTAGATTCATGGCTGCATCCAACTCTCTGTCGCTGAAGCACGGCCTCTCTTTCTGCTGCCCGCACTCTGGTTCCTTTTCCAGACCTCAACAGCCTTCTTCCGTTGCCTTCAGAGGCTTCCGGAGAAGCTACGTTGCTGCCTCCACGGATTTCGCCAACGATAATAGAGAGTTTGTGATTGTTGGTGGTGGAAATGCTGCTGGTTATGCAGCTCGTACTTTCGTCGAGCACGGGATGGCGGATGGACGGCTTTGTATAGTATCTAAGGAGGCATTTGCGCCGTACGAGCGTCCGGCTCTGACGAAAGGTTACTTGTTTCCTCTTGATAAAAAACCAGCTCGCTTGCCTGGGTTTCATACTTGTGTTGGAACTGGTGGGGAAAGGCAAACTCCAGAATGGTACAAGGATAAAGGTATTGAGACGTTTTATCAAGATCCAGTTATGGGTATTGATATAAAAAACCAAACCCTTCGAACTACTTCAGGCAAACTGCTCAAGTATGGAGCCCTTTTTATAGCAACAGGATGTACGGCCTCAAGATTTCCAGATAAGATCGGTGGTGAGCTACCTGGTGTTCACTACATCCGAGATGTCGCAGATGCAGATTCACTAATCTCCTCATTGGAGAAAGCTAAAAAGGTGGTGGTTGTTGGTGGTGGTTATATTGGTATGGAGGTCGCTGCAGCAGCTGTTGGTTGGAAACTTGATACAACAATCATATTTCCCGAGAATCATCTATTGCAAAGACTTTTTACTCCTTCGCTGGCCAGGAAGTATGAAGAATTTTACCAGGAGAATGGTGTCAAATTCATAAAGGGGGCCTCCATAAAAAATTTGGAAGCTGGTGCAAATGGTCGGGTCACTTCTGTTAGACTTGCAGATGGATCTTCCATCGAAGCAGACACGGTAGTAATAGGCATTGGTGCAAAGCCTGCTGTCGGTCCGTTTGAGCAAGTGGGATTGAATAGCACTGTTGGCGGTATACAGGTTGATGGCCTGTTCAGAACAAAAATTCCAGGAATCTTTGCAGTTGGAGATGTGGCAGCATTCCCATTAAAGCTGTATGATCGTGTAGCTCGGGTAGAACATGTGGATCATGCTCGTCGATCGGCTCAGCATTGTGTCAAAGCATTACTAACTGCTCATACTCAAACATACGATTATCTTCCATACTTCTACTCAAGGGTGTTTGAATACGAAGGGAGCCCTAGAAAAATATGGTGGCAATTTTTTGGGGATAATGTTGGTGAGACAGTTGAAATTGGGAACTTTGATCCTAAGATTGCTACTTTTTGGATTGATTCTGGTAAATTAAAAGGGGTTCTTCTTGAAAGCGGAAGTCCTGAGGAATTTGAACTTCTTCCAAAGCTCGCAAGGTTCCAGCCTTCGGTTGATAAAGCTAAACTTCAAAATGCGTCTTCAGTTGAGGAAGCACTGGATATTGCCCGAGCATCTTTGCAGCAGAAAGTTGTGGTGAAAGTTGAAATAAGTGATGCAAAGACAAAGAGAAAGGTGTTGGGTGCTGTTTCTGCCCTTTTAGGCATTGTATCAATGACAGCAGACACAAAAGAGAACAAAATTACAGTGATTGGAACTACAGACCCAATTAAGATTGTTGAGAAAGTAAGAAAGATTTGGCCCTCAGCTTACATTATTAGTGTTGGACCAGACAAAGAAGAAGCAAAGAAAGAAGAGCCAAAGAAAGAAGAATCACAACCCAAAATTGAACAAATTGATTGGAAAGTTGTGGTGAACGTTGAAATAAGTGATGCAAAGACAAAAAAAAAGGTGTTGGGTGCTGTTTCTGCCCCCTTAGGTATTGTGTCAATGACAGCAGACACAAAAGAAAACAAAATCATTGTGATTGGAACTGCAGACCCAATTAAGATCATAAAGAAAGTAAGAAAGATTTGGCCCTCAGCTTACATTATTAGTATTGGACCAGACAAAGAAGAAGCAAAGAAAGAAGAATCCCGACCCAAAATTGAGCAAATTGATTGGGTCCCTTTCCTCTTTGGCATTGGTATTGTCTTCATCCTTCGTAAGACGACTGCTGACAAAGATAATGACAAGATCAACTACAACCAGTTCATTGTCTTTATAGGTGCATTGTTTTGTCCATCGCATCTTTTCCATAGAGTGGTAGTGAAATTGGACTTACATGATGATAGAGGAAAGCAAAAGGCCTTGAAAACAGTATCTGTTCTCCAAGATCCTATTGATGTCGTTGCTAAGGTTCAAAAGCATTGGCCAAACGTTGACATCGTCAGCATCGGCCTGACAAAGAAAGAGAAGAAGGACCAAAATGAAAAGATGGAAGAGCTGCTTCAATTGTACATAAAAAGCTATGATCATCATGGTTATACTCTTAATTATGATGTGTACGGTGAAGAGAAAGTTGTGTTGAAATTGGACTTACATGATGATAAAGGAAAGCAAAAGGCTTTGAAAGCTGTCTCTGTCCTTCAAGGAATTGAATCGATCGCCATGGACATGAAGGACAAGAAGCTAACTGTAATAGGGGAAGTTGATCCAGTTGATGTGGTTGCAAAAGTCCGAAAGCATTGGCCCAACGCCGATATCGTCAGCGTCGGCCCGGCGAAGGAAGAGAAGAAGCCAGAGGCAAAGAAAGAACCAGAGAAGCCAAAGCCAAAGAGTGAAAGTGAACAAATTGAAGAGATGCTTAAATTGTACAAAAGCTATGGTTATACTCCTTATGGAGGTCCTAATTACCGTGTGTATAGTATAGAGGAGAATCCTAATTCTTGTATCATATCTTGA 2793 42.57 MSPVRRFMAASNSLSLKHGLSFCCPHSGSFSRPQQPSSVAFRGFRRSYVAASTDFANDNREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCVGTGGERQTPEWYKDKGIETFYQDPVMGIDIKNQTLRTTSGKLLKYGALFIATGCTASRFPDKIGGELPGVHYIRDVADADSLISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLARKYEEFYQENGVKFIKGASIKNLEAGANGRVTSVRLADGSSIEADTVVIGIGAKPAVGPFEQVGLNSTVGGIQVDGLFRTKIPGIFAVGDVAAFPLKLYDRVARVEHVDHARRSAQHCVKALLTAHTQTYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFELLPKLARFQPSVDKAKLQNASSVEEALDIARASLQQKVVVKVEISDAKTKRKVLGAVSALLGIVSMTADTKENKITVIGTTDPIKIVEKVRKIWPSAYIISVGPDKEEAKKEEPKKEESQPKIEQIDWKVVVNVEISDAKTKKKVLGAVSAPLGIVSMTADTKENKIIVIGTADPIKIIKKVRKIWPSAYIISIGPDKEEAKKEESRPKIEQIDWVPFLFGIGIVFILRKTTADKDNDKINYNQFIVFIGALFCPSHLFHRVVVKLDLHDDRGKQKALKTVSVLQDPIDVVAKVQKHWPNVDIVSIGLTKKEKKDQNEKMEELLQLYIKSYDHHGYTLNYDVYGEEKVVLKLDLHDDKGKQKALKAVSVLQGIESIAMDMKDKKLTVIGEVDPVDVVAKVRKHWPNADIVSVGPAKEEKKPEAKKEPEKPKPKSESEQIEEMLKLYKSYGYTPYGGPNYRVYSIEENPNSCIIS 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2652091 2678690 - CaPI482276_01g002360.1 Cam01g0236 117318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0236 930 SUPERFAMILY FAD/NAD(P)-binding domain 61 403 IPR036188 -
Cam01g0236 930 Pfam Heavy-metal-associated domain 809 860 IPR006121 GO:0046872(InterPro)
Cam01g0236 930 PRINTS FAD-dependent pyridine nucleotide reductase signature 330 352 - -
Cam01g0236 930 PRINTS FAD-dependent pyridine nucleotide reductase signature 304 320 - -
Cam01g0236 930 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Cam01g0236 930 PRINTS FAD-dependent pyridine nucleotide reductase signature 217 235 - -
Cam01g0236 930 PANTHER APOPTOSIS-INDUCING FACTOR 1 61 476 IPR050446 GO:0005737(PANTHER)|GO:0016651(PANTHER)
Cam01g0236 930 PRINTS Pyridine nucleotide disulphide reductase class-I signature 305 319 - -
Cam01g0236 930 PRINTS Pyridine nucleotide disulphide reductase class-I signature 217 242 - -
Cam01g0236 930 PRINTS Pyridine nucleotide disulphide reductase class-I signature 61 83 - -
Cam01g0236 930 PRINTS Pyridine nucleotide disulphide reductase class-I signature 345 352 - -
Cam01g0236 930 Gene3D - 487 564 - -
Cam01g0236 930 Gene3D - 799 874 - -
Cam01g0236 930 Gene3D - 581 656 - -
Cam01g0236 930 Gene3D - 63 378 IPR036188 -
Cam01g0236 930 ProSiteProfiles Heavy-metal-associated domain profile. 491 558 IPR006121 GO:0046872(InterPro)
Cam01g0236 930 Gene3D - 395 482 IPR016156 -
Cam01g0236 930 Gene3D - 185 312 IPR036188 -
Cam01g0236 930 Pfam Monodehydroascorbate reductase 3-like, C-terminal domain 393 473 IPR048618 -
Cam01g0236 930 Coils Coil 762 786 - -
Cam01g0236 930 Pfam Pyridine nucleotide-disulphide oxidoreductase 62 374 IPR023753 GO:0016491(InterPro)
Cam01g0236 930 SUPERFAMILY HMA, heavy metal-associated domain 491 555 IPR036163 GO:0046872(InterPro)
Cam01g0236 930 MobiDBLite consensus disorder prediction 866 894 - -
Cam01g0236 930 MobiDBLite consensus disorder prediction 869 894 - -
Cam01g0236 930 ProSiteProfiles Heavy-metal-associated domain profile. 801 868 IPR006121 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0236 K08232 - - csv:101214011 926.391
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0092 Cam-Chr1:1213101 Cam01g0236 Cam-Chr1:2652091 8.60E-23 dispersed
Cam01g0236 Cam-Chr1:2652091 Cam04g1012 Cam-Chr4:24310861 1.90E-102 dispersed
Cam09g1301 Cam-Chr9:15955572 Cam01g0236 Cam-Chr1:2652091 3.50E-13 transposed
Cam01g0236 Cam-Chr1:2652091 Cam05g0155 Cam-Chr5:1728973 1.00E-26 wgd
Cam01g0236 Cam-Chr1:2652091 Cam05g1005 Cam-Chr5:9085199 2.70E-16 wgd
Cam01g0236 Cam-Chr1:2652091 Cam06g0346 Cam-Chr6:5570440 8.80E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g39 . . . . . . . . . . . Cma15g01252 . Car15g01129 . . . . . . . . . . Cla07g00757 Cam07g0809 Cec07g0870 Cco07g0847 Clacu07g0790 Cmu07g0797 Cre07g1153 . . Cone6ag0809 . . Csa05g00244 Chy09g01260 Cme07g01617 . . . . . . . . . . Cmo15g01127 Cma06g01085 . . . . Cpe13g00133 Bhi12g00309 . . . Hepe06g1514 . Lcy12g1614 Cla01g00230 Cam01g0236 Cec01g0228 Cco01g0242 Clacu01g0233 Cmu01g0226 Cre09g2284 Lsi09g00219 Csa04g00608 Chy07g01204 Cme09g01797
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008344 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34