Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0245 ATGGTAGTTGGAGGAGGGTTTTTTTACAATTCCAATTCAAATTCAAACAACATCCCAAATCAGTTCACAAACCAGATCCAAACCGGGTTCGGTTCCACCACCGAACACGCGACGGAGATGTTCAATGAGTCGAGTGGTGGCGGTGGTGGTGACGACGATGAGTCGTTTCATCAGAATATGATGGTGGTTGGACCGTGGGGGACGACAACGACGACGATGGCGACGACGGATTCTTCTTTAAGATGTGTGTTTCCATGTGAACCAAATGAAAGACCAAGCCAAGGCCTTTCTTTGTCTCTTAGTTCTTCTAATCCTTCTTCTATTGGCTTACAATCTTTTGAACTAAGACAACAACACCAATCATCTTTCCCCATTTTTCACCTTAGAAACTCAAGGTTCTTAATCCCAACTCAAGAGCTTCTTTATGAGTTTTGTAGCCTTGGAATCACCAATAACATCAATCATTCTTCTTCCTCACCAAAACAAAAACATGGCTCTTCTTCTACCACTTTCTCTCTTCAATCACTTGATTTCATGGACTTGCAAAAGAGGAAAACTAAGCTTTTCTCCATGCTTGAAGAGGTTGAAAGAAGGTATAGGCATTATTGCGAGCAAATGAAGGCGGTGGTGGCGTCATTCGAAGCGGTGGCGGGGAATGGGGCGGCGAGGGTATACTCGGCGTTAGCGTCGAAAGCGATGTCGAGGCATTTTAGGAGCCTAAAAGATGGGATTGTGGGGCAAATTCAAGCCACAAGAAAGGCAATGGGAGAAAAGGATCCAATTGCACCTGGTACAACAAGAGGAGAAACACCAAGGCTTAGAGTGATTGATCAAGCTTTAAGGCAACAAAGAGCTTTCCATCAAATCAGCATCATGGAAAGCCATCCATGGCGCCCTCAACGTGGCCTCCCCGAGCGTTCTGTTTCGGTTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTGGATAAACATATTTTAGCTCGCCAAACTGGTCTATCCAGAAGCCAGGTGTCAAATTGGTTCATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTAGAAGAGATGTATTTGGAAGAAACAAAGGAACAAGAGGAAGAGATTGACAACAGTTTCAACAACATGAACAACAATGCCAACAACTCTTTTGATGGGGTGGGGGATTTCGACGACGAAATCGACGGTCATCGATCAATCGTGACACGACTCGAGGATCAGAAACCAACTCCGGATCAACTCCTAAGAATAGACTCGGAATGTCTCTCTTCAATCATCTCTAATAACACGGAGAAGAATGACTCAAGAACGATGAAAACCTTGCAAAACCACCACCTCCACGAAAACCACAACCACACCTTCGGACGGGTTGTGAGTGACGCCTTCGGCACGGTAGAGCTCGACTTCTCGTCCTACAACCACCATACCGGTAGTGGTGGAGTTACGTACCCTAACAACAACAACAACAACAATCAACATTTCAACAACGGCAATGGTGGGGGCGTGTCATTGACATTAGGGTTACAGCAGCACGCAGCAGCTGCGGGAAACGGCAACGGAGGGGTGAGCATCGCCTTCTCTCCGGCAGCAGCGGCGGCACAAAGCTCCCTTTTCTTCACAAGAGATCACATGGAAGAATGCCAACCAGTTCAGTATTCCCTTTTAGATGGAGAAACTCAGAATCTTCCATACAGAAATTTGATGGGTGCTCAATTGCTTCATGATTTGGCTGGATAA 1752 46.18 MVVGGGFFYNSNSNSNNIPNQFTNQIQTGFGSTTEHATEMFNESSGGGGGDDDESFHQNMMVVGPWGTTTTTMATTDSSLRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRQQHQSSFPIFHLRNSRFLIPTQELLYEFCSLGITNNINHSSSSPKQKHGSSSTTFSLQSLDFMDLQKRKTKLFSMLEEVERRYRHYCEQMKAVVASFEAVAGNGAARVYSALASKAMSRHFRSLKDGIVGQIQATRKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISIMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQEEEIDNSFNNMNNNANNSFDGVGDFDDEIDGHRSIVTRLEDQKPTPDQLLRIDSECLSSIISNNTEKNDSRTMKTLQNHHLHENHNHTFGRVVSDAFGTVELDFSSYNHHTGSGGVTYPNNNNNNNQHFNNGNGGGVSLTLGLQQHAAAAGNGNGGVSIAFSPAAAAAQSSLFFTRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2746669 2749688 - CaPI482276_01g002450.1 Cam01g0245 117327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0245 583 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 385 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam01g0245 583 Coils Coil 364 384 - -
Cam01g0245 583 CDD homeodomain 297 358 IPR001356 GO:0003677(InterPro)
Cam01g0245 583 Gene3D - 300 362 - -
Cam01g0245 583 ProSiteProfiles 'Homeobox' domain profile. 294 357 IPR001356 GO:0003677(InterPro)
Cam01g0245 583 FunFam BEL1-like homeodomain protein 4 300 362 - -
Cam01g0245 583 Pfam Homeobox KN domain 314 353 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam01g0245 583 SMART prehox3 122 246 IPR006563 -
Cam01g0245 583 SMART HOX_1 297 361 IPR001356 GO:0003677(InterPro)
Cam01g0245 583 SUPERFAMILY Homeodomain-like 298 363 IPR009057 -
Cam01g0245 583 Pfam Associated with HOX 128 244 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0245 Cam-Chr1:2746669 Cam02g1346 Cam-Chr2:26108584 7.80E-78 dispersed
Cam01g0245 Cam-Chr1:2746669 Cam10g1793 Cam-Chr10:32060581 5.60E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51189 PF07526 POX 5.70E-41 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0245 - - - 0.0