Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0267 ATGGTAATGTTTCCTCAGCTTCTCATCAGCATTTCGCAGTTGTCTTTAACATTAGCCAAACTGAAATTGGAGCTGGTGGAGTGGTTAAATTTTCTGCTCCCCGATATAAATTTGCCACTGGATGCTTCAGATGAGGAATTGAGAGCATGCTTGATTGATGGAACTGTACTATGCAGCATGTTGGATAAACTATGCCCTGGCGCAGTTCAGGGAGGCAATTCTAAGCCCATCGTTCCTAATATTGAGAGTTTTCTAATAACTCTGGATGAATTAGCACTTCCTGGATTTGAACCTTCTGCCTTAGAGCAGGGATCCATTGCACCGGTTTTGCACTGCTTGAGCACACTTCGAGCTTCTTTTGATTTGAGTGTTGGGGATGAGTACACTCAAAATTATTCACGAAAAAAATGGAACTTATATGAAGTAGACTCATTAGATGGAATCAATAATTTATCCGGGCAAAGATTTCAAGATTTTCAGAATGGTTCGGTTGTATCAGTGCCATCAAATGGTTTAAACAGTCATGTTCAATACGAGGATCATGAAGGGCAAGAACAAACTCTTGATGTTTCTGGTTCTAACATCTTGGAGTTGATAAAATCAAAAAATCTTGAGAATGTCTCTACTCAATCACTTTTCAATATGATCAATCGAATTCTGGATGGCAGTGTTGAAGCAAAAAATGGAGATGTGTCACATCAAGTAGCTTATATTCTGAGAAAAGTTGTACAAGTGCTTGAGCAGAGGATTTTAACTCATGCTGGAAACCTGAGACATCAAAGCAATCTTTTGAAAGCTCGGGAGGAGAAATTTCTCTCAAAATTAAGAGTCCTTGAAACCCTTGCAACAGGGACCACGGAAGAAAATGAGGTTGTCATGAACCAGCTTCAGCGTTTGAAGATTGAAATGTTCAAAGTAGAGGAGATGAAAAACTGTGGGGAGCAGGATAAGATGGCGTTGAAGGAGCAAAAGGCACTCTGTGATGTCGAGCTTTCAAATCTTAAAGATGAGCTAGACAAAGTTAAAAGGGAACATGAAAATCATTGCTTACAACTGGAAACAAATGCTAAGGAGGAGAAAGCTAAGTTTGAGGAGAAACTAAATGAACTTGAATACTTATTAGCTGATTCCAGGAAGAACGTGAAGGAACTTGAGACATTTTCTGAATCTAAATCACTGAGATGGAAAAAGAAAGAGTTCGTCTATCAAAATTTTGTTGATGATCTGCTTCGAGCTTTTCAGGAATTAAGGATTTCAGTGGAGTCCATCAAACTTGAGGTCTTGAATACAAAAGGAAACTATGCTGAGGATTTTAATTTCCTTGGATCGAAGTTCAAAGGATTAGCAGACGTGGCTCAGAATTACCATGCAGTTCTGAATGAAAATAGAAGATTGTATAATGAAGTTCAGGATTTAAAAGGCAACATTCGAGTGTATTGTCGGATACGGCCATTCCTTCCAGGACAAAGCAAGAAGCTAACTACAGTTGAGTATATTGGTGAAAATGGTGAATTGGTGATTATAAATCCCGCTAAACAAGGAAAAGACAATCGTAGACTATTCAAATTCAATAAAGTTTTTGGTCCGACATGTTCACAAGAGGATGTGTTTTTAGACACTCAACCATTAATTCGATCTGTCCTCGATGGATATAATGTTTGCATATTTGCTTATGGACAAACTGGTTCAGGAAAGACCTATACTATGAGTGGACCTGATGTATCATTGAGAGCAGAATGGGGTGTTAACTATCGAGCATTAAATGACCTCTTTGAAATTTCTCAAAGCAGGAAGGGCTCTATTTCCTATGAAATTGGTGTCCAAATGGTTGAGATATACAATGAGCAAGTCCTACCTGATGCCGGTATGCATCCTGTTAGATCTACTAGCGATGTCCTGGATTTGATGAAGATTGGATTGACAAACAGGGCAGTTGGAGCCACCGCCTTGAATGAAAGAAGCAGCAGATCTCATAGTGTGCTGACAATTCATGTTCGTGGTGTGGACTTGGAGACAGATGCTATCTTACGTGGTAGTCTTCATTTAATAGATCTTGCCGGTAGTGAAAGGGTGGACCGTTCAGAGGCGACTGGAGATAGGCTGAAGGAGGCACAACACATTAACAAATCATTGTCGGCACTTGGGGATGTAATTTTTGCTCTTGCACAGAAGAATTCGCACATACCTTACAGAAATAGCAAACTAACCCAAGTCCTCCAAAGTTCTTTAGGTGGTCAAGCAAAGACGCTCATGTTTGTACAGATTAATCCCGATGTAGAGTCATACTCTGAAACAATAAGCACCCTGAAGTTTGCAGAAAGAGTTTCTGGTGTAGAGTTGGGTGCTGCCCGCAGCAATAAAGAGGGTAGATATGTTAGAGAACTCATGGATCAGGTGGCCGTTCTCAAGGATACCATTGCAAATAAAGACGAGGAGATTGAGCGTTTGCAGTTGCTTAAAACTAATGGCAATGGTGTAAAGCATGGCGCTGGTTCCCTAAGATATGAGTCATTTTCTCCTAGAAGGTACTCTAGCACAACTCCTCGGCAGAGCCAAAAGCCATCAGGAAGAAAAGGCTTAGGGTTGGCGAATAAAGCAGCATCCGACATGGACAATTTCTCAGATTATGACAGGCGTTCTGAAGCTGGATCACTTCAGTCTATGGATGACTTTAGACATCATAAGCGTTCTGGATCTGGGTCACATCTGTTTATAGAAGACTTTAGACATAAGCGTTCTGGATCTGGATCACATCTGTCTGTAGAGGACTTTAAACATCAGAAGGAATCTTCTTCACAGTCAAGGGCTTTAAGTCAGAATGTTACTGATGATGTTGACCTTTTAGGCTTTGGAAATGCTGATTCTGACGAGAGATTAAGTGACATATCAGATGGTGGGCTTTCGATGGGAACTGAAACCGATGGATCAATTTGCAGTGTTGTGGAATATACTCTTTTCCCTGAAGTTCTAAAACCATCAGATGTTCCGTTTGCCGATACCAAATACCCGGAGAGCACATTGGATGTAAACAGGCCAGTAGAGACTGCAACAACTGGGGGGAAGTCATTGGTTCCTATTCCAGAAAAAACCAATGCATCATTGAAGTCAGGCCCCAGGCCCCCACAAAAGCCCGTGCAAGCAAAACCGTCAAGAGTTTCATTGACGAAAAGCTCCTCAAAGGCTCCATCAGCATCAAGTGCCAAAAAAACGATTGTTGGTAGCTCCTCGTCGATGAAAAGCCACAAAAGGACTGATGGCCAATCTTCTCCTCTGCTGCAGCCTGCATTGGGCTTGAATTGTTTGACAGTAACTCAGAAGATGTCTTTGTTAGAACCTTGTAAATATCATTCCACATCATCAGTTTGGAGTCTACTAAATGGTGGTAGTGACATGTCAGCTAAATCCTGGAAAGGAAAAGGCCTTACTAGTGTACGAATCTCACACGATATGGGTAAGATATATGGATGGATGAACTGTGTAAGTCATAGTGAAGCAGGCTACCCTGTGAAAGTTGCTAATACTGGAAGCATGAAAGCCAATGCATTCAAGGCTAGAGATGGTCTTCGTGAAGCAGGGGTCTGCATTTCAGGAGCTTCAAGTTTTCTTGTTCATGAGTTGATTAATGAAACTTCAAGGAATACTCCTATGTTCCAATCAATTAATGTATCATCTTTTTTCATCCGAAAGTTGGAAATAAAAATGTTAGAAAATGTTTATATGGCTTCTCGTATCCTTATGATTGTTCAAGATAATAAGGCAGATGGCAGTCTAGTAGAGAGCCCAAATCCAGATATTTTGGCAGCTCATTCAGTACCTTCCGTAGATGGTGCATTAGACAATTTAGACTACAGGCAGAAGACTAATAGTAGTAGTGAACAACATGAGAATAAAACCAAAAAGTTGGACAAGCTCATTGTTGAAAATGAGTACAACAGAGAGAATTCCTCATTGACCCGTGAAAAATCTTGTTACACTATTGCTAAGCAAGAACATGCCTTTGCAGGGGCGTTGGCTGGTGTATTTGTCAGTCTTTGTCTACATCCTGTTGATACAGTCAAAACAGTGGTTCAGTCTTATCATGCAGAACAGAAGTCTCTCAGTTACATTGGAAAATCAATTGTCTCCGATCGAGGTTTAAGTGGACTTTATCGTGGAATCTCCACCAACATTGCTTCTTCAGCTCCGATATCTGCTGTTTACACTTTCACATATGAATCAGTTAAAGGAGCTTTGCTTCCACTTCTCCAAGAGATTTTTTTGGGGTCTTTACTCTTGCTCTCTCCCTCTCCAAGTAGAAGTTTGGAGTACGCTGAAGAGGAGTATCGCTCTATTGTCCACTGTATGGCTGGTGGTTGTGCAAGTATTGCTACATCTTTTCTTTTTACCCCAAGTGAGCGTATAAAACAGCAGATGCAAGTTAGTGCACACTACCATAACTGCTGGAATGCCTTTGTTGGTGTTGTTGCAAAGGGTGGATTGCGTGGATTATATACTGGGTGGGGAGCTGTTCTTTGCAGAAATGTACCACACTCAATTATCAAGTTCTATACATATGAAAGTTTGAAGGGATTGATGAAATCTAATGCTCAACAAACTACTTCACAAACGTTAGTATGTGGAGGAGTAGCTGGATCTACTGCCGCTTTGTTTACCACTCCTTTTGATGTTGTAAAGACCAGATTACAAACGCAAATACCAGGATCTCTGAGCCCATATAAAAGTGTAATTCAAGCACTCTATGAAATAGGCAAGAAAGAAGGTCTGAAAGGCCTTTATAGGGGCCTGACTCCAAGACTGATTATGTACATGTCTCAAGGTGCAATCTTCTTCTCCTCTTATGAATTTTTGAAGAGACTTTTTTCTCTCGAGTTGCCGAACATGATACTGCAAGAGTGCAACACCGACAAATGA 4911 40.79 MVMFPQLLISISQLSLTLAKLKLELVEWLNFLLPDINLPLDASDEELRACLIDGTVLCSMLDKLCPGAVQGGNSKPIVPNIESFLITLDELALPGFEPSALEQGSIAPVLHCLSTLRASFDLSVGDEYTQNYSRKKWNLYEVDSLDGINNLSGQRFQDFQNGSVVSVPSNGLNSHVQYEDHEGQEQTLDVSGSNILELIKSKNLENVSTQSLFNMINRILDGSVEAKNGDVSHQVAYILRKVVQVLEQRILTHAGNLRHQSNLLKAREEKFLSKLRVLETLATGTTEENEVVMNQLQRLKIEMFKVEEMKNCGEQDKMALKEQKALCDVELSNLKDELDKVKREHENHCLQLETNAKEEKAKFEEKLNELEYLLADSRKNVKELETFSESKSLRWKKKEFVYQNFVDDLLRAFQELRISVESIKLEVLNTKGNYAEDFNFLGSKFKGLADVAQNYHAVLNENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKLTTVEYIGENGELVIINPAKQGKDNRRLFKFNKVFGPTCSQEDVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDVSLRAEWGVNYRALNDLFEISQSRKGSISYEIGVQMVEIYNEQVLPDAGMHPVRSTSDVLDLMKIGLTNRAVGATALNERSSRSHSVLTIHVRGVDLETDAILRGSLHLIDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKNSHIPYRNSKLTQVLQSSLGGQAKTLMFVQINPDVESYSETISTLKFAERVSGVELGAARSNKEGRYVRELMDQVAVLKDTIANKDEEIERLQLLKTNGNGVKHGAGSLRYESFSPRRYSSTTPRQSQKPSGRKGLGLANKAASDMDNFSDYDRRSEAGSLQSMDDFRHHKRSGSGSHLFIEDFRHKRSGSGSHLSVEDFKHQKESSSQSRALSQNVTDDVDLLGFGNADSDERLSDISDGGLSMGTETDGSICSVVEYTLFPEVLKPSDVPFADTKYPESTLDVNRPVETATTGGKSLVPIPEKTNASLKSGPRPPQKPVQAKPSRVSLTKSSSKAPSASSAKKTIVGSSSSMKSHKRTDGQSSPLLQPALGLNCLTVTQKMSLLEPCKYHSTSSVWSLLNGGSDMSAKSWKGKGLTSVRISHDMGKIYGWMNCVSHSEAGYPVKVANTGSMKANAFKARDGLREAGVCISGASSFLVHELINETSRNTPMFQSINVSSFFIRKLEIKMLENVYMASRILMIVQDNKADGSLVESPNPDILAAHSVPSVDGALDNLDYRQKTNSSSEQHENKTKKLDKLIVENEYNRENSSLTREKSCYTIAKQEHAFAGALAGVFVSLCLHPVDTVKTVVQSYHAEQKSLSYIGKSIVSDRGLSGLYRGISTNIASSAPISAVYTFTYESVKGALLPLLQEIFLGSLLLLSPSPSRSLEYAEEEYRSIVHCMAGGCASIATSFLFTPSERIKQQMQVSAHYHNCWNAFVGVVAKGGLRGLYTGWGAVLCRNVPHSIIKFYTYESLKGLMKSNAQQTTSQTLVCGGVAGSTAALFTTPFDVVKTRLQTQIPGSLSPYKSVIQALYEIGKKEGLKGLYRGLTPRLIMYMSQGAIFFSSYEFLKRLFSLELPNMILQECNTDK 1636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2972893 2992076 + CaPI482276_01g002670.1 Cam01g0267 117349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0267 1636 ProSiteProfiles Kinesin motor domain profile. 475 778 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam01g0267 1636 Gene3D - 16 121 IPR036872 -
Cam01g0267 1636 ProSiteProfiles Calponin homology (CH) domain profile. 19 121 IPR001715 GO:0005515(InterPro)
Cam01g0267 1636 MobiDBLite consensus disorder prediction 915 940 - -
Cam01g0267 1636 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1531 1619 IPR018108 -
Cam01g0267 1636 Gene3D Kinesin motor domain 419 617 IPR036961 -
Cam01g0267 1636 MobiDBLite consensus disorder prediction 915 930 - -
Cam01g0267 1636 MobiDBLite consensus disorder prediction 829 877 - -
Cam01g0267 1636 Coils Coil 324 380 - -
Cam01g0267 1636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 816 IPR027417 -
Cam01g0267 1636 Coils Coil 455 475 - -
Cam01g0267 1636 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1326 1410 IPR018108 -
Cam01g0267 1636 MobiDBLite consensus disorder prediction 1048 1091 - -
Cam01g0267 1636 PRINTS Kinesin heavy chain signature 679 697 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam01g0267 1636 PRINTS Kinesin heavy chain signature 648 665 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam01g0267 1636 PRINTS Kinesin heavy chain signature 550 571 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam01g0267 1636 PRINTS Kinesin heavy chain signature 728 749 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam01g0267 1636 Gene3D Kinesin motor domain 618 820 IPR036961 -
Cam01g0267 1636 Pfam Microtubule binding 461 617 IPR031852 GO:0008017(InterPro)
Cam01g0267 1636 MobiDBLite consensus disorder prediction 1008 1091 - -
Cam01g0267 1636 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 417 619 - -
Cam01g0267 1636 Pfam Mitochondrial carrier protein 1531 1621 IPR018108 -
Cam01g0267 1636 Pfam Mitochondrial carrier protein 1330 1411 IPR018108 -
Cam01g0267 1636 Pfam Mitochondrial carrier protein 1442 1527 IPR018108 -
Cam01g0267 1636 SMART kinesin_4 473 786 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam01g0267 1636 SUPERFAMILY Calponin-homology domain, CH-domain 20 116 IPR036872 -
Cam01g0267 1636 Gene3D Mitochondrial carrier domain 1438 1630 IPR023395 -
Cam01g0267 1636 Gene3D Mitochondrial carrier domain 1290 1429 IPR023395 -
Cam01g0267 1636 PANTHER KINESIN-LIKE PROTEIN KLP-3 24 1039 IPR027640 GO:0003777(InterPro)|GO:0007017(PANTHER)|GO:0007018(InterPro)|GO:0008017(PANTHER)|GO:0015630(PANTHER)
Cam01g0267 1636 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1441 1524 IPR018108 -
Cam01g0267 1636 MobiDBLite consensus disorder prediction 838 854 - -
Cam01g0267 1636 ProSitePatterns Kinesin motor domain signature. 678 689 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cam01g0267 1636 SUPERFAMILY Mitochondrial carrier 1330 1616 IPR023395 -
Cam01g0267 1636 Pfam Kinesin motor domain 620 776 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam01g0267 1636 FunFam Kinesin-related protein3 620 820 - -
Cam01g0267 1636 Coils Coil 792 819 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0267 K27887 - - csv:101218386 1866.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0267 Cam-Chr1:2972893 Cam10g1634 Cam-Chr10:30172575 2.50E-190 dispersed
Cam01g0267 Cam-Chr1:2972893 Cam03g0516 Cam-Chr3:5997210 6.00E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g321 . . . . . . . . . . Cma02g01450 . Car02g01217 . . . Cpe05g00338 . . . . . . . . . . . . . . Cone8ag0303 . . . . Csa05g00280 Chy09g01229 . . . . . Bpe08g01484 . . . . Cmo02g01486 . . . . . . . Bhi12g00262 . . . . . . Cla01g00261 Cam01g0267 Cec01g0259 Cco01g0274 Clacu01g0266 Cmu01g0255 Cre09g2252 Lsi09g00256 . . Cme09g01764
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54