Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0313 ATGGCTGACCAAAAGCTTCAAATTAATGAAAGCCAAATAGACCAATCTCTTCATCCTCCTCCTCCAATATCTAAACCAATTGTCATTGACCCTTTTGTTCCTTCTGTCCCCACATCCCAAAATCCAAATCCTAAGTCACAAGAGGGTGAAGGTGAACAAAAACAACCTAATTTGCCTCAACAACTCCCACCACTACCTCCTTCATCTTCCATGGCTTCTTCTTCAACTAAGAAGCATTCTTTGTATAGAGGAATTCGCTGCCGGAGCGGCAAATGGGTGTCCGAGATACGCGAGCCACGTAAGACAACACGCATATGGCTCGGCACGTTTCCGACTGCAGAGATGGCTGCTGCCGCTTATGATGTTGCTGCCCTTGCCCTCAAAGGCGGCGATGCGGTTCTTAACTTCCCTTCCTCCATTCCCACCTACCCTGTTCCTGCGTCGACTTCTCCGGTCGATATTCGCACAGCTGCCTCCACTGCCGCTGCTGCTACCGCCGCTAATGCGTTGAAGAAAGCTGCGTCATCAACTTCCCCGGTTGACGTTTGCACTACGGAAGATAGTAGCAATACCACGATGGGAATGGAGGAGTTTGTGGATGAAGAAGAAATTTTTGGGATGCCGGGTTTGTTGGCGGACATGGCGGAGGGGATGATGGTGTCCCCGCCGAGAATAAACTCGCCACCACTGTCCGATGACTCGATGGAAAATTCTGATGGAACGGAAAGTTTATGGAGCTACTTTTGA 747 49.67 MADQKLQINESQIDQSLHPPPPISKPIVIDPFVPSVPTSQNPNPKSQEGEGEQKQPNLPQQLPPLPPSSSMASSSTKKHSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALKGGDAVLNFPSSIPTYPVPASTSPVDIRTAASTAAAATAANALKKAASSTSPVDVCTTEDSSNTTMGMEEFVDEEEIFGMPGLLADMAEGMMVSPPRINSPPLSDDSMENSDGTESLWSYF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3470650 3471396 + CaPI482276_01g003130.1 Cam01g0313 117395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0313 248 CDD AP2 80 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0313 248 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0313 248 FunFam Ethylene-responsive transcription factor 2 80 138 - -
Cam01g0313 248 MobiDBLite consensus disorder prediction 223 248 - -
Cam01g0313 248 MobiDBLite consensus disorder prediction 34 58 - -
Cam01g0313 248 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677(InterPro)
Cam01g0313 248 ProSiteProfiles AP2/ERF domain profile. 81 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0313 248 MobiDBLite consensus disorder prediction 1 82 - -
Cam01g0313 248 MobiDBLite consensus disorder prediction 1 18 - -
Cam01g0313 248 Pfam AP2 domain 81 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0313 248 MobiDBLite consensus disorder prediction 227 248 - -
Cam01g0313 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 69 247 IPR045277 GO:0003700(InterPro)
Cam01g0313 248 SMART rav1_2 81 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0313 Cam-Chr1:3470650 Cam05g0933 Cam-Chr5:8444587 3.40E-38 dispersed
Cam01g0313 Cam-Chr1:3470650 Cam01g0314 Cam-Chr1:3497656 1.20E-27 tandem
Cam10g0361 Cam-Chr10:5855238 Cam01g0313 Cam-Chr1:3470650 2.00E-50 transposed
Cam01g0313 Cam-Chr1:3470650 Cam05g0932 Cam-Chr5:8425898 2.10E-32 wgd
Cam01g0313 Cam-Chr1:3470650 Cam06g0253 Cam-Chr6:4367494 8.40E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51193 PF00847 AP2 2.40E-10 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0313 - - - 0.0