Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g0314 ATGGATTGGTTCGCTCAATTTTCTGACCCTCTTCCTTATTATGCTAATTGTAGTTACAAATCGGAATCCTCTTCCACGTTTTCAGACGCCGGAACACCTCCTCATACGGTCGCTAACTCCGATGAAGAAGTGATTCTGGCGTCCAACCGCCCAAAGCGGCGGGCCGGGCGCCGGGTTTTTAAAGAAACCAGACATCCGGTTTACAGAGGAGTACGCCGGAGGAATAACGACAAATGGGTTTGTGAGCTGAGGGAGCCAAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACGGCGGACATGGCGGCGCGTGCGCACGATGTAGCGGCACTCGCGTTGAGAGGGAAATCGGCTTGTCTCAATTTCGCTGACTCTGCTTGGCGGTTCCCGATTCCGGCGACTGATGACCCGTCTGTGATCAGGGAGGCGGCGGCGAGGGCGGCGAATGAGTGTAAGGATGAGGAATGTAATGTGGGTCGGGAAGAGGACGACGGCGTTTCGGGTCAGGCGACGGCGGATCCTGACCGACCGGATTATATCGACGATGAGGCTTTGTCGAATATGCCGATGTTGCTTGCCAGCATGGCGGAAGGACTTCTTCTTTCTCCTCCATCTTTTTGTGTCAATGATGACGTGGAGTGGGATGATGTGGCAATGAATGATGATGTGTCATTGTGGAGCTTTTAG 690 53.48 MDWFAQFSDPLPYYANCSYKSESSSTFSDAGTPPHTVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCELREPNKKTRIWLGTYPTADMAARAHDVAALALRGKSACLNFADSAWRFPIPATDDPSVIREAAARAANECKDEECNVGREEDDGVSGQATADPDRPDYIDDEALSNMPMLLASMAEGLLLSPPSFCVNDDVEWDDVAMNDDVSLWSF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3497656 3498345 + CaPI482276_01g003140.1 Cam01g0314 117396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g0314 229 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0314 229 SMART rav1_2 67 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0314 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 23 229 IPR045277 GO:0003700(InterPro)
Cam01g0314 229 FunFam Ethylene-responsive transcription factor 2 66 125 - -
Cam01g0314 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0314 229 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0314 229 CDD AP2 68 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0314 229 MobiDBLite consensus disorder prediction 159 178 - -
Cam01g0314 229 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677(InterPro)
Cam01g0314 229 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g0314 229 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0314 Cam-Chr1:3497656 Cam01g0578 Cam-Chr1:6153415 4.30E-56 dispersed
Cam01g0313 Cam-Chr1:3470650 Cam01g0314 Cam-Chr1:3497656 1.20E-27 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51194 PF00847 AP2 1.30E-13 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g0314 - - - 0.0